Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0493 ATGGCGGAAGCGATGATGGTGGAGAACGGCAACGGAAACGGCAAGGAGGACTTGGGTGAGTGCTTGATCGGATACTTCGACGAAGGTAGCCATGAGTCCCACAGGTACTACCTCTCCCGAAGAACCACCCTAGAGATGCTCAAGGACAGAGGCTACTCCATCCCTGCTTCTGAAATCGACCTCTCTCTCTCCCAATTCAGAGCCATTCACGGTGATTCCCCCGACGTCGACCGCCTCCGCTTCTCCGCCACTCACCTCTCTGATCCTTCCAAGAGGATTTTAGTTATCTTCTGTGGCCAACACATTGTGAAAGTTACTTCCATCCGCAGCATTGCAGCGCAGATTGTCAATAGAGAAACTTTAAGTGGCCTCATTTTGATTGTTCAAAGTACTATTACTAGCCAGGCCTTGAAAGCTGTCAATCTTTTCTCATTCAAAGTTGAAATCTTTCAGATCACAGACTTGCTTATTAATATTACAAAGCATGTATTGAAGCCAAAGCATGAAATTCTAACTGACAAACAGAAAAAGAACCTCCTAAAGAAGTACAATTTAGAAGAAAAGCAGCTACCCCGCATTCTACAAACAGATGCAATTGCAAGATACTATGGACTAGAGAAAGGGCAAGTAGTTAAGATAACTTACAGTGGTGATATCACTCAGATGCATGTCGCCTATCGATGCGTTTGGTGA 693 0.4502 MAEAMMVENGNGNGKEDLGECLIGYFDEGSHESHRYYLSRRTTLEMLKDRGYSIPASEIDLSLSQFRAIHGDSPDVDRLRFSATHLSDPSKRILVIFCGQHIVKVTSIRSIAAQIVNRETLSGLILIVQSTITSQALKAVNLFSFKVEIFQITDLLINITKHVLKPKHEILTDKQKKNLLKKYNLEEKQLPRILQTDAIARYYGLEKGQVVKITYSGDITQMHVAYRCVW* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0493 230 Pfam RNA polymerase Rpb5, N-terminal domain 31 114 IPR005571 GO:0003677|GO:0003899|GO:0006351
Ahy16g0493 230 PANTHER DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A 14 230 - -
Ahy16g0493 230 Gene3D - 27 154 IPR036710 GO:0003677|GO:0003899|GO:0006351
Ahy16g0493 230 PIRSF RPB5 25 230 IPR014381 -
Ahy16g0493 230 Pfam RNA polymerase Rpb5, C-terminal domain 157 229 IPR000783 GO:0003677|GO:0003899|GO:0006351
Ahy16g0493 230 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 14 230 IPR014381 -
Ahy16g0493 230 SUPERFAMILY RPB5-like RNA polymerase subunit 155 230 IPR035913 -
Ahy16g0493 230 Gene3D - 155 230 IPR035913 -
Ahy16g0493 230 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 31 158 IPR036710 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0493 Ahy-Chr16 9117589 9118916 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0493 K03013 - gmx:100306033 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0493 16 9117589 9118916 Ahy6g0840 6 10545742 10547132 hybridization