Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0479 ATGATACCCGAGGAAACTTCGTGGAAGGTGACTGAAGGTCCAAAACATGGAGATCCATTTAAGGCAACCTGCTTCGTCCCTCCTTCCCCTCAATCCTTTTCTTCTTCTTCTTCTTCTTCAAACACTTTCTCTCTATTCCCACACCAACCACCAATGAAGCTCATCAACATCAATCCCAAGAACCTCAAGCTTTCCCCTAAGCGTCTCTTCCGTTCCTCCAAGAAGGACCGTTCCGCTCCCTCCAGATCCGATCCTCCCTCATTCGGATCCTCCGCATCCTCCTCCGAGGGCTCCACTCACAAGTCCGCCGCCGCCGGTGGTTCCGCCACGCCTACTAGTGTCCTCCCTGATGCTTCTGGCGACTGGTCCATCGAGCTCCACCTCGAGCTCTCACAGGCCTTCCGCCTCATCGACCGCGATGGCGACGGCGTCGTCTCACGCCAGGAGCTTGAGGCGGTTCTGACGAGCTTGGCGGCACTGCGATCGGAGGAAGTGGCGGCGATGCTGCGTGAGGTCGACGCTGAGGGCCGTGGATGCATCAGCGTCGAGGAGCTGGTGAGTCGAGTCGGTTCCGTTGGCGATGTTCCCATGACGGAAGAGGATGAGCTGAGGGAAGCATTCGAGGTGTTTGACAGCGACGGCGACGGGCGGATCTCGGCACAGGAGCTGCTTAGGGTTTTCCAAGCGATCGGCGACGAGCGGTGCACGTTAGAGGAGTGCAGGCGCATGATAGAGGGCGTGGATAGGAACGGGGATGGGTTTGTGTGCTTCGAGGACTTTTCTCGTATGATGGAGTTGCAGCAACAGCAACGGTGA 816 0.5772 MIPEETSWKVTEGPKHGDPFKATCFVPPSPQSFSSSSSSSNTFSLFPHQPPMKLININPKNLKLSPKRLFRSSKKDRSAPSRSDPPSFGSSASSSEGSTHKSAAAGGSATPTSVLPDASGDWSIELHLELSQAFRLIDRDGDGVVSRQELEAVLTSLAALRSEEVAAMLREVDAEGRGCISVEELVSRVGSVGDVPMTEEDELREAFEVFDSDGDGRISAQELLRVFQAIGDERCTLEECRRMIEGVDRNGDGFVCFEDFSRMMELQQQQR* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0479 271 CDD EFh 129 189 IPR002048 GO:0005509
Ahy16g0479 271 MobiDBLite consensus disorder prediction 1 116 - -
Ahy16g0479 271 SMART efh_1 164 192 IPR002048 GO:0005509
Ahy16g0479 271 SMART efh_1 202 230 IPR002048 GO:0005509
Ahy16g0479 271 SMART efh_1 129 157 IPR002048 GO:0005509
Ahy16g0479 271 SMART efh_1 239 267 IPR002048 GO:0005509
Ahy16g0479 271 MobiDBLite consensus disorder prediction 27 47 - -
Ahy16g0479 271 PANTHER CALCIUM-BINDING PROTEIN CML35-RELATED 60 267 - -
Ahy16g0479 271 SUPERFAMILY EF-hand 123 265 IPR011992 -
Ahy16g0479 271 MobiDBLite consensus disorder prediction 83 116 - -
Ahy16g0479 271 CDD EFh 202 264 IPR002048 GO:0005509
Ahy16g0479 271 ProSitePatterns EF-hand calcium-binding domain. 211 223 IPR018247 -
Ahy16g0479 271 ProSiteProfiles EF-hand calcium-binding domain profile. 198 233 IPR002048 GO:0005509
Ahy16g0479 271 ProSiteProfiles EF-hand calcium-binding domain profile. 235 270 IPR002048 GO:0005509
Ahy16g0479 271 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 60 267 - -
Ahy16g0479 271 ProSitePatterns EF-hand calcium-binding domain. 248 260 IPR018247 -
Ahy16g0479 271 ProSitePatterns EF-hand calcium-binding domain. 138 150 IPR018247 -
Ahy16g0479 271 Gene3D - 194 271 - -
Ahy16g0479 271 Gene3D - 121 190 - -
Ahy16g0479 271 ProSiteProfiles EF-hand calcium-binding domain profile. 125 160 IPR002048 GO:0005509
Ahy16g0479 271 Pfam EF-hand domain pair 130 186 IPR002048 GO:0005509
Ahy16g0479 271 Pfam EF-hand domain pair 201 264 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0479 Ahy-Chr16 8858949 8860112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0479 63 264 EF-hand Containing Proteins AT2G41410 53.431 5.49e-60 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0479 K13448 - gmx:100815559 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0479 16 8858949 8860112 Ahy16g0479 16 8858949 8860112 ECH
Ahy16g0479 16 8858949 8860112 Ahy6g0855 6 10790063 10791174 hybridization