Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0267 ATGTTGTTCTTCTCGTACTTCAAGGATTTGGTGGGAAGAGAAGTAACGGTGGAGCTCAAGAACGATTTGGCCATAAGGGGCACTCTTCACTCCGTTGACCAGTACCTCAACATCAAGCTCGAGAACACTCGCGTCGTTGACCAAGACAAGTACCCCCATATGCTTTCTGTGAGGAACTGCTTCATCAGAGGTTCAGTGGTCAGATACGTGCAATTACCTCCAGAAGGCGTGGACGTTGAACTATTGCACGATGCCACTAGGAGAGAAGCTCGGGGTGGTTAA 282 0.4929 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPEGVDVELLHDATRREARGG* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0267 93 CDD LSm2 2 90 IPR016654 GO:0006397
Ahy16g0267 93 PANTHER SNRNP CORE PROTEIN FAMILY MEMBER 1 91 IPR016654 GO:0006397
Ahy16g0267 93 SUPERFAMILY Sm-like ribonucleoproteins 3 92 IPR010920 -
Ahy16g0267 93 PIRSF Lsm2 1 93 IPR016654 GO:0006397
Ahy16g0267 93 Gene3D - 1 92 - -
Ahy16g0267 93 Pfam LSM domain 7 71 IPR001163 -
Ahy16g0267 93 SMART Sm3 5 72 IPR001163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0267 Ahy-Chr16 6026102 6029234 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0267 K12621 - sind:105163231 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0267 16 6026102 6029234 Ahy16g0267 16 6026102 6029234 ECH
Ahy16g0267 16 6026102 6029234 Ahy6g1059 6 14303866 14306968 hybridization