Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0231 ATGAAGCTCGTTAGGTTTCTCATGAAGTTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGTACTATTGTCCACGGCACTATCACAGGTGTTGATATCAGTATGAATACACATTTGAAAACCGTTAAACTAACCCTGAAAGGGAAAAACCCAGTGACTCTGGATCATCTTAGTGTGAGAGGCAACAACATTCGTTATTACATCCTTCCAGACAGCTTGAATCTCGAGACTTTACTAGTTGAAGAGACTCCAAGAGTCAAGCCCAAGAAGCCAACTGCTGGGAAGCCGTTGGGGAGAGGAAGGGGAAGAGGACGTGGGCGTGGACGTGGTCGTGGCCGTTAA 345 0.4638 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0231 114 MobiDBLite consensus disorder prediction 82 114 - -
Ahy16g0231 114 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 110 IPR027141 GO:0006396
Ahy16g0231 114 Gene3D - 50 82 - -
Ahy16g0231 114 Gene3D - 1 49 - -
Ahy16g0231 114 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 1 110 - -
Ahy16g0231 114 SMART Sm3 5 70 IPR001163 -
Ahy16g0231 114 SUPERFAMILY Sm-like ribonucleoproteins 4 113 IPR010920 -
Ahy16g0231 114 Pfam LSM domain 5 69 IPR001163 -
Ahy16g0231 114 MobiDBLite consensus disorder prediction 93 114 - -
Ahy16g0231 114 CDD Sm_D1 2 93 IPR034102 GO:0000387
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0231 Ahy-Chr16 2532538 2534681 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0231 K11087 - rcu:8272063 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0231 16 2532538 2534681 Ahy16g0231 16 2532538 2534681 ECH
Ahy16g0231 16 2532538 2534681 Ahy6g1090 6 15713871 15716084 hybridization