Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0165 ATGATTCTGAAACCAGAGGTCAATTTCCAGGGCTTTCTTCCCTCCAAGAGAGCTATTGTTTCAGTAAAGAGGTATACTCCAGTGGCCGCTATCAAGACGATGGAAACAGTTGGGCTCTCTGAAACCTTCACTAGGCTGAAGAAACAAGGAAAAGTGGCATTCATTCCATACATCACAGCTGGTGATCCTGATCTTTCAACCACAGCAGAAGCACTGAAAGTTCTTGATTCATGTGGCTCCGACATAATTGAGCTAGGTGTTCCATACTCAGATCCTTTGGCAGATGGTCCTGTTATCCAGGCTGCTGCTACTCGTTCTCTAGCAAAGGGCACCAATTTTGATGCTATTATCTCTATGTTGAAAGAGGTTGTTCCACAATTGTCTTGTCCAATTGCACTTTTTACTTATTACAATCCGATACTAAAGCGTGGCACTGAGAAATTTATGTCTACCATTAGAGACTGTGGTGTTCACGGACTTGTAGTTCCCGATGTTCCTCTGGAAGAGACAAAAACTTTAAGGATGGAAGCAAAGAACAATGGAATTGAACTGGTACTCTTGACCACACCTACCACACCAACAAACAGAATGAAAGCCATTGTGGATGCGTCGGAAGGATTTGTGTATCTTGTGAGCTCAGTGGGTGTCACCGGAGCCCGAGCATCGGTTAGTGATAAGGTTCAAACTCTTTTGCAGGAAATCAAAGAGGCAACAACTAAGCCAGTGGCAGTTGGTTTCGGGATATCGAAACCTGAGCATGTGAAACAGATAGCAGGATGGGGGGCAGATGGTGTGATTGTTGGAAGTGCTATGGTGAAGCTGCTTGGTGAGGCTAATTCGCCTCAAGAGGGATTGAAAGAACTGGAAAACTTAACCAACTCCTTAAAATCAGCACTTCCTTGA 903 0.4441 MILKPEVNFQGFLPSKRAIVSVKRYTPVAAIKTMETVGLSETFTRLKKQGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAKGTNFDAIISMLKEVVPQLSCPIALFTYYNPILKRGTEKFMSTIRDCGVHGLVVPDVPLEETKTLRMEAKNNGIELVLLTTPTTPTNRMKAIVDASEGFVYLVSSVGVTGARASVSDKVQTLLQEIKEATTKPVAVGFGISKPEHVKQIAGWGADGVIVGSAMVKLLGEANSPQEGLKELENLTNSLKSALP* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0165 300 TIGRFAM trpA: tryptophan synthase, alpha subunit 43 296 IPR002028 GO:0004834|GO:0006568
Ahy16g0165 300 Coils Coil 220 240 - -
Ahy16g0165 300 Gene3D Aldolase class I 38 300 IPR013785 -
Ahy16g0165 300 Pfam Tryptophan synthase alpha chain 43 298 IPR002028 GO:0004834|GO:0006568
Ahy16g0165 300 ProSitePatterns Tryptophan synthase alpha chain signature. 83 96 IPR018204 GO:0004834
Ahy16g0165 300 SUPERFAMILY Ribulose-phoshate binding barrel 39 279 IPR011060 -
Ahy16g0165 300 PANTHER TRYPTOPHAN SYNTHASE ALPHA CHAIN 34 299 - -
Ahy16g0165 300 PANTHER TRYPTOPHAN SYNTHASE, ALPHA CHAIN 34 299 IPR002028 GO:0004834|GO:0006568
Ahy16g0165 300 CDD Tryptophan_synthase_alpha 53 296 IPR002028 GO:0004834|GO:0006568
Ahy16g0165 300 Hamap Tryptophan synthase alpha chain [trpA]. 49 298 IPR002028 GO:0004834|GO:0006568
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0165 Ahy-Chr16 1759827 1763548 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0165 K01695 - gmx:732610 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0165 16 1759827 1763548 Ahy6g1160 6 16915330 16918953 hybridization