Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0119 ATGATATCTCAGTTGTTCGTGCTTTCTCAACGAGGCGATAACATCGTCTTCCGTGACTATCGCCGTGATGTTCACAAAGCGAGCGCCGAGACATTTTTCCGCAAAGTCAAGTTCTGGAACGACGATGGTGAAGAAGATGCTCCACCTGTCTTTAATGTGGATGGAGTGAACTACTTCCATGTGAAGGTTGCCGGGTTGTTGTTTGTTGCTACAAACAGGGTCAATGTATCCCCCTCTCTTGTCTTGGAGCTCTTGCAGCGGATCGCTCGTCTCATCAAGGATTACCTTGGCGTTCTTAATGAAGATTCATTGCGGAAGAATTTCGTGCTTGTCTATGAATTGCTGGATGAAGTCATTGATTTTGGTTATGCACAAACAACTTCCACGGAGCTTTTGAAATCTTATATTTTCAACGAGCCAATTATGATTGATTCTGCAGTGATGCCTCCCCTTGGTGCTGCATCCATTTTTGTGAAAGGGAACAAACGAATGCCAAGCACAGTTATTACAAAGTCTGTTGTTGCTAATGAACCTGGTGGTAGAAAGAGGGAGGAGATTTTTGTTGACGTAATCGAGAAAATAAGTGTCACATTCAACTCTAGCGGATATATACTTACTAGTGAGATAGACGGCACCATTCAAATGAAGAGTTACCTTACGGGTAACCCAGAGATTCGGCTTGCTCTCAATGAGGACCTGAGTATAGGAAGAAGTGTTTTGCCACCGTTGACAGATTATGCAAGTTCCACTGCAGTGATTCTAGACGATTGTAACTTCCATGAGTCTGTACACCTTGATAGTTTTGATACTGACCGAACCTTGTCATTGGTTCCACCAGAAGGGGAATTCCCAGTCATGAATTATCGAATGACTCAACCGTTTAAGCCTCCATTTCGTATTAATGCATTGCTTGAAGAAACAGGACCCCTGAAAGCCGAAGTGATAATTAAAGTTTGTGCTGACTTCAACCCAAGTATCAATGCTAACACAGTTCTTGTACAGATGCCAGTGCCAAAATTTACCAATCGAGTTAATTTTGAGTTGGATCGTGAATCAGTTGGGAACACAACTGACTTCAAGGAAGCAAATAAGAGACTAGAGTGGAGCATAAAAAAGGTTGTCGGCGGAGCGGAACATACTTTACGAGCGAAACTAACTTTTTCACAGGAGTTACTTGGCAATATCATGAAGGAGGCAGGGCCTGTTAGCATGACCTTTGATATACCAATGTATCATGCTTCAAGGCTTCAGGTGAAGTATTTGCAAATAGCAAAGAAATCAAAGGCACATAATCCATATAGATGGGTTAGATATGTGACCCAAGCAAACTCATATGTTGCCCGCTTGTAA 1350 0.4244 MISQLFVLSQRGDNIVFRDYRRDVHKASAETFFRKVKFWNDDGEEDAPPVFNVDGVNYFHVKVAGLLFVATNRVNVSPSLVLELLQRIARLIKDYLGVLNEDSLRKNFVLVYELLDEVIDFGYAQTTSTELLKSYIFNEPIMIDSAVMPPLGAASIFVKGNKRMPSTVITKSVVANEPGGRKREEIFVDVIEKISVTFNSSGYILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGRSVLPPLTDYASSTAVILDDCNFHESVHLDSFDTDRTLSLVPPEGEFPVMNYRMTQPFKPPFRINALLEETGPLKAEVIIKVCADFNPSINANTVLVQMPVPKFTNRVNFELDRESVGNTTDFKEANKRLEWSIKKVVGGAEHTLRAKLTFSQELLGNIMKEAGPVSMTFDIPMYHASRLQVKYLQIAKKSKAHNPYRWVRYVTQANSYVARL* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0119 449 Pfam Adaptor complexes medium subunit family 182 448 IPR028565 -
Ahy16g0119 449 PIRSF AP_complex_mu 1 449 IPR001392 GO:0006886|GO:0016192|GO:0030131
Ahy16g0119 449 SUPERFAMILY SNARE-like 1 141 IPR011012 -
Ahy16g0119 449 ProSiteProfiles Mu homology domain (MHD) profile. 183 448 IPR028565 -
Ahy16g0119 449 PANTHER AP COMPLEX SUBUNIT MU 2 449 - -
Ahy16g0119 449 Gene3D Mu homology domain, subdomain B 182 444 - -
Ahy16g0119 449 Gene3D Mu homology domain, subdomain B 296 448 - -
Ahy16g0119 449 CDD AP4_Mu_N 3 143 - -
Ahy16g0119 449 Gene3D - 1 142 - -
Ahy16g0119 449 PRINTS Clathrin coat assembly protein signature 12 32 IPR001392 GO:0006886|GO:0016192|GO:0030131
Ahy16g0119 449 PRINTS Clathrin coat assembly protein signature 254 281 IPR001392 GO:0006886|GO:0016192|GO:0030131
Ahy16g0119 449 PRINTS Clathrin coat assembly protein signature 101 128 IPR001392 GO:0006886|GO:0016192|GO:0030131
Ahy16g0119 449 PRINTS Clathrin coat assembly protein signature 367 378 IPR001392 GO:0006886|GO:0016192|GO:0030131
Ahy16g0119 449 CDD AP-4_Mu4_Cterm 178 449 - -
Ahy16g0119 449 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 2 449 - -
Ahy16g0119 449 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 182 448 IPR036168 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0119 Ahy-Chr16 1159300 1164148 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0119 K12402 - gmx:100800985 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0119 16 1159300 1164148 Ahy16g0119 16 1159300 1164148 ECH