Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g3684 ATGGCTGAACCTTCCAAGGTCATTCACGTTCGAAATGTGGGGCATGAGATATCTGAAAATGATTTACTTCAGCTATTTCAGCCTTTTGGAGTCATCACAAAGCTTGTTATGTTGCGTGCTAAAAATCAGGCTCTTCTCCAAATGCAAGATGTTCCGTCCGCAATTAGTGCTTTACAATTTTATGCAAATGTTCAGCCTAGCATTAGGGGGAGAAATGTTTATGTCCAGTTTTCCTCACATCAAGAACTAACTACAATGGATCAAAATCAAGGACGTGAAGATGAGCCAAATCGAATTCTCTTAGTTACAATTCACCACATGCTGTATCCTATAACTGTGGATGTGCTACATCAAGTGTTTTCCCCCCATGGATATGTTGAAAAGATTGTAACGTTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATCCAGTATCAATCACGTCAAAGTGCTGTTACCGCTAGAAGTACACTTCAGGGACGCAACATATATGATGGTTGCTGTCAACTGGACATTCAGTTCTCGAACCTTGATGAATTACAAGTGAACTACAACAATGATCGATCAAGGGACTTCACAAACCCAAATCTTCCAACGGAGCAGAAAGGCCGATCTTCACAACCTGGCTATGGTGATGCAGGAAGCATGTATGGTGTTCAAGGTTCTGGAGCTGGAGGATATTCACAGATGGCCAATGCTGCAGCAATTGCAGCTGCCTTTGGGGGAGGCTTGCCTCCTGGGATAACCGGAACAAACGACAGGTGTACAATTCTTGTTGCAAATCTCAATCCTGATAGAATAGATGAAGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATTGTCAGAATCAAACTTCTTAGGAACAAACCAGATCATGCGCTTATCCAAATGGGGGATGGTTTCCAAGCCGAATTGGCAGTACATTTTCTTAAGGGAGCTATGTTGTTCGGGAAGCGATTGGAGGTCAACTTCTCGAAGCATCCGAATATAACCCAAGGTGCCGAAACACACGAGTATGTGAATTCAAATCTCAACCGGTTCAATCGCAATGCTGCTAAAAACTACCGGTATTGCTGCTCGCCAACCAAGATGATCCATTTGTCAACCCTCCCACAAGACATCACTGAAGAGGACATTGTAAGCCTTGTGGAGGAGCACGGAACCATTGTCAACAGCAAGGTCTTTGAGATGAATGGAAAAAAGCAGGCTCTTGTTCAGTTTGAAACTGAGGAGCAGGCTACCGAGGCCCTTGTCTGCAAGCACGCAAGCCCACTTTCTGGCTCGGTGATTCGAATCTCCTTTTCTCAGTTGCAGAACATTTGA 1326 0.4397 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAISALQFYANVQPSIRGRNVYVQFSSHQELTTMDQNQGREDEPNRILLVTIHHMLYPITVDVLHQVFSPHGYVEKIVTFQKSAGFQALIQYQSRQSAVTARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRSSQPGYGDAGSMYGVQGSGAGGYSQMANAAAIAAAFGGGLPPGITGTNDRCTILVANLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGAETHEYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEEDIVSLVEEHGTIVNSKVFEMNGKKQALVQFETEEQATEALVCKHASPLSGSVIRISFSQLQNI* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g3684 441 Pfam RRM-like domain 97 174 IPR021790 -
Ahy15g3684 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Ahy15g3684 441 CDD RRM1_PTBPH3 6 80 IPR034795 -
Ahy15g3684 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 237 339 - -
Ahy15g3684 441 Gene3D - 98 201 IPR012677 -
Ahy15g3684 441 CDD RRM2_PTBPH3 96 183 IPR034796 -
Ahy15g3684 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 328 IPR000504 GO:0003723
Ahy15g3684 441 CDD RRM4_PTBPH3 357 435 - -
Ahy15g3684 441 Gene3D - 251 347 IPR012677 -
Ahy15g3684 441 MobiDBLite consensus disorder prediction 186 207 - -
Ahy15g3684 441 Gene3D - 1 97 IPR012677 -
Ahy15g3684 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Ahy15g3684 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 369 431 IPR000504 GO:0003723
Ahy15g3684 441 SUPERFAMILY RNA-binding domain, RBD 3 91 IPR035979 GO:0003676
Ahy15g3684 441 Gene3D - 353 438 IPR012677 -
Ahy15g3684 441 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 440 - -
Ahy15g3684 441 SUPERFAMILY RNA-binding domain, RBD 252 435 IPR035979 GO:0003676
Ahy15g3684 441 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 440 - -
Ahy15g3684 441 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 4 437 IPR006536 GO:0003723|GO:0005634|GO:0006397
Ahy15g3684 441 MobiDBLite consensus disorder prediction 186 211 - -
Ahy15g3684 441 SUPERFAMILY RNA-binding domain, RBD 95 197 IPR035979 GO:0003676
Ahy15g3684 441 SMART rrm1_1 101 170 IPR000504 GO:0003723
Ahy15g3684 441 SMART rrm1_1 255 324 IPR000504 GO:0003723
Ahy15g3684 441 SMART rrm1_1 365 434 IPR000504 GO:0003723
Ahy15g3684 441 SMART rrm1_1 7 76 IPR000504 GO:0003723
Ahy15g3684 441 CDD RRM3_PTBPH3 253 328 IPR034797 -
Ahy15g3684 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 364 438 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g3684 Ahy-Chr15 159653829 159658259 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g3684 K14948 - gmx:100798234 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3684 15 159653829 159658259 Ahy15g3684 15 159653829 159658259 ECH