Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g3520 ATGAATTCTTTAGTCCTTTTAGGTCATAGGATGGTTCACAAGTTTTCACATTGTGTGAACATTTGTAGGAATTTATGCAATCAACCTTTTCACTGCGATGATGATGAGGTTCGGAGTGGTTTTGAATTGGTTGAGGAGCCTTTGAAGAAAATGTGTGCTACCTCTTGTGACACTGTTGATTTTGATCCGAATGAGGATAATGCTAGCTTAGACAGGAAGCATTTTTTGCATAGGAATGGGTCCATAGAAAATGTGGGAATGGATGCTGAGAAAATTCTCGAGGTTCTTGGACAGGATAGTCCCGAGTTAGATTTTAGACGGGCTTTGGATGGATTGCGTGTTAGGCCATCAGCTTTTCTCGTGAGGGAGGTTCTGTATGGGATGTTGAAAGGCATAAACTGTGAAAACAAGGGGAGATGCGCTAAACTGGCATACAAATTTTTTCTGTGGTGTGGGCAGCAGGAGGGTTACTGGCACACTGCAAATTCCTATCACTTGGTTCTGCAGATATTTGCCGAGTGTGATGAGTTTCAAGCAATGTGGAGGCTTGTTGATGAGATGATTGAGAAAGGATTTCCAGCTACTGCTCGCACTTTCCACATTTTGATCTGCACTTGTGGTGAGGCAGGGTTTGCTAGGAAGTTGGTGATGAAGTTCATTAAGTCAAAATCATTTAACTACCGGCCCTTTAGGCACTCCTACAATGCAATTCTCCACTGTCTTCTTGTTTTAAACCAGTACCGTTTGATTGAGTGGGTTTATAGGCAGATGTTGCTTGATGGTTTTTCCTCTGATGTTTTGACTTACAACATTGTTATGTTAGCAAAGTATCGACTTGGAAAATTCAATCACTTTAACAGGTTGCTTTATGAGATGGGTAGAAATGGTCATTCTCCTGATTTTCATACTTACAACATTCTTCTTCATGTTCTTGGTAAAGGAGATAAACCTCTTGCAGCTCTTAATCTTCTAAATAGCATGAAAGAAACTGGTATAGAGCCAACTGTTCTTCATTTCACCACATTAATTGATGGACTAAGCAGAGCTGGAAATCTAGAGGCTTGCAAATATTATTTTGACGAAATGATAAAAAATGGGTGTATGCCAGATGTGGTGGCATACACTGTAATGATCACAGGATATGTGGTGGCTGGTGATCTTGAAAGAGCTCAGGAAATGTTCAATGAGATGATTTCTAGAGGACAAATCCCAAATGTATTTACATACAATTCCATGATTCGCGGATTATGTATGGCCAGAAAGTTTGATGAAGCATGCTCAATGCTACAGGAAATGGAGGCCAAAGGTTGTAGTCCAAATTTTATTGTCTATACTACACTAGTGAGTAATTTACGGAATGCTGGAAAGCTTGCTTTAGCACATAAAGTGATAAGGCAGATGATGGAGAAGGGGAAGTATACCCACCTTATTTCAAGCATCAAGGTGAAAAGGCGCAAGAAATAG 1464 0.4016 MNSLVLLGHRMVHKFSHCVNICRNLCNQPFHCDDDEVRSGFELVEEPLKKMCATSCDTVDFDPNEDNASLDRKHFLHRNGSIENVGMDAEKILEVLGQDSPELDFRRALDGLRVRPSAFLVREVLYGMLKGINCENKGRCAKLAYKFFLWCGQQEGYWHTANSYHLVLQIFAECDEFQAMWRLVDEMIEKGFPATARTFHILICTCGEAGFARKLVMKFIKSKSFNYRPFRHSYNAILHCLLVLNQYRLIEWVYRQMLLDGFSSDVLTYNIVMLAKYRLGKFNHFNRLLYEMGRNGHSPDFHTYNILLHVLGKGDKPLAALNLLNSMKETGIEPTVLHFTTLIDGLSRAGNLEACKYYFDEMIKNGCMPDVVAYTVMITGYVVAGDLERAQEMFNEMISRGQIPNVFTYNSMIRGLCMARKFDEACSMLQEMEAKGCSPNFIVYTTLVSNLRNAGKLALAHKVIRQMMEKGKYTHLISSIKVKRRKK* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g3520 487 Gene3D Tetratricopeptide repeat domain 398 472 IPR011990 GO:0005515
Ahy15g3520 487 Pfam Pentatricopeptide repeat domain 428 471 IPR002885 -
Ahy15g3520 487 TIGRFAM PPR: pentatricopeptide repeat domain 407 440 IPR002885 -
Ahy15g3520 487 TIGRFAM PPR: pentatricopeptide repeat domain 442 471 IPR002885 -
Ahy15g3520 487 TIGRFAM PPR: pentatricopeptide repeat domain 302 336 IPR002885 -
Ahy15g3520 487 TIGRFAM PPR: pentatricopeptide repeat domain 372 406 IPR002885 -
Ahy15g3520 487 TIGRFAM PPR: pentatricopeptide repeat domain 339 371 IPR002885 -
Ahy15g3520 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Ahy15g3520 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Ahy15g3520 487 Pfam PPR repeat family 369 417 IPR002885 -
Ahy15g3520 487 Pfam PPR repeat family 302 347 IPR002885 -
Ahy15g3520 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Ahy15g3520 487 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 485 - -
Ahy15g3520 487 Gene3D Tetratricopeptide repeat domain 128 242 IPR011990 GO:0005515
Ahy15g3520 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Ahy15g3520 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Ahy15g3520 487 PANTHER OS10G0506000 PROTEIN 1 485 - -
Ahy15g3520 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Ahy15g3520 487 Gene3D Tetratricopeptide repeat domain 253 397 IPR011990 GO:0005515
Ahy15g3520 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g3520 Ahy-Chr15 157929516 157934568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g3520 253 486 Glycosyltransferase AT1G05670 27.083 2.71e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g3520 - - ccaj:109794849 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3520 15 157929516 157934568 Ahy15g3520 15 157929516 157934568 ECH