Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g3400 ATGAGCTTCGCGGCCTACAAGATGATGCACTGCCCAACCGGCATCGATAACTGTGCCTCCGGTTTCCTCACTCACTCACGCGCCGACTACGTTCCACGCGTCCCTCCTCTTCCCGCCGACGACCTGGACCCTGACTCAGACTGGCCCAACCCCGCCACCCGCCGCGACCTCGGCCCCATTCCCAACCTTATCCTCACTTCTGCCAATGTCCTCGAAGTCTATGCCGTCAGGGTCCACGAGGAATCTGCTAAGGGTCCTCCGGCTGCAGCTGAGTCCAGCCGTGGCGGCGTTTTCGACGGCGTCACCGGGGCCTCACTCGAGCTTGTTTGCCATTACAGGTTACATGGTAATGTTGAAGCCATGGGTGTGTTGAGCATTGGAGCTGGTGATGGTTCTAGAAGGAGGGATTCAATCATCTTAACTTTTAAAGATGCAAAGATTTCAGTTCTAGAGTATGATGATTCTATTCATGGACTTCGTACAAGTTCCTTGCATTGTTTTGAGGGTCCAGAATGGCTTCATTTGAAAAGAGGAAGAGAACAGTTTGCAAATGGTCCCCTGGTAAAGGTTGATCCTCAAGGCAGGTGTGGTGGGGTTCTTGTCTATGATTTGCAAATGATAATACTAAAGGCTACTCAGGCTGGTTCTGGTTTAGTTGGAGACGATGATACCTTGGGTTCTGGAGGTGCAGTTGCTGCTCGTATCGAGTCATCTTATATGATAAATCTACGGGACTTGGATATGAGGCATGTAAAAGATTTTACATTTGTTCATGGATATATTGAACCTGTTATGGTCATCCTGCATGAATGCGAGCTTACTTGGGCTGGGCGTCTCTCGTGGAAGCACCATACATGCATGATATCTGCACTTAGTATTAGCACAACTTTGAAGCAGCATCCACTCATTTGGTCAGCTGTTAATCTCCCCCATGATGCCTACAAGCTTCTAGCAGTGCCCTCACCAATAGGTGGTGTTCTTGTAATTGGAGCTAACACTATTCATTATCATAGTCAGTCAGCTTCATGTGCATTGGCCTTGAATAGCTATGCTGTTTCACTTGATAGCAGTCAGGAGATGCCAAGATCAACTTTCAATGTGGAGCTTGATGCTGCCAATGCAACTTGGCTGTCAAATGATGTGGCCTTGCTGTCAACAAAAACTGGCGAACTGCTATTGCTTGTGCTTGTTTATGATGGAAGGGTCGTGCAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTTTGTCATCTGGTATAACGACAATTGGAAATTCTCTGTTTTTTCTCGCGAGTCGATTGGGAGACAGTATGCTGGTGCAATTTTCTTGTGGATCTGGTGTTTCAATGTCATCGTCTAATAATCTAAAAGAGGAGGTTGGTGATATTGAAGTAGATGCTCCTTCATCAAAGAGATTGCGAAGGTCACCTTCTGATGCTTTGCAAGATTTGGTTAGTGGCGAGGAGCTTTCATTGTATGGATCTGCACCAAATAGAACAGAATCAGCACAGAAAACATTCTCATTTGCAGTTAGGGATTCATTGATTAACGTTGGTCCTCTAAAAGATTTCTCATATGGTTTGAGGATAAATGCTGATGCAAATGCTACAGGGATTGCCAAACAGAGTAACTATGAATTGGTGTGCTGTTCTGGTCATGGAAAGAATGGTTCTATCTGTGTTCTTCGGCAATCAATTCGCCCAGAAGTGATAACTGAGGTTGAACTTCCTGGTTGCAAAGGAATTTGGACTGTTTATCATAAGAGCTCACGGTCTCATAGTGCTGATTCCTCTAAGATGGCTAATGATGACGATGAATATCATGCATACCTGATTATAAGTTTGGAGGCTCGTACTATGGTACTAGAAACAGCTGATCTTCTTAGTGAGGTTACTGAAAGTGTCGAGTATTATATTCGTGGTAAAACACTTGCTGCAGGAAATTTATTTGGAAGGCGTCGAGTTATCCAAGTTTTTGAGCATGGTGCTCGAATTCTTGACGGGTCTTTTATGACCCACGAAAAATTTTTTGGATCTTCTAACTCTGAATCTAATTCTGGATCTGAGAATGTGATGGCGGTTTCTGTTTCTATTGCTGATCCATACGCATTGATCAGAATGAGCGATGGAAGTATTCGACTTTTAATTGGAGATCCTAGTACCTGCACCATTTCTGTTACTACTCCGGCTTCACTTGAAAGCTCAAAAGGATCAGTTTCTTCTTGCACACTGTATCATGATAAAGGGCCTGAGCCATGGCTAAGGAAGACAAGTACTGATGCATGGCTTTCTACTGGTGTTGGTGAGGCTATTGATGGTGCAGATGGTGCAGCTCAGGACCATGGAGATATTTATTGTGTTGTGTGTTATGAAAATGGTAGCCTTGAAATATTTGATGTGCCCAATTTTAGTTGTGTTTTTTCTGTGGAAAACTTTATGTCTGGAAAGAGTCACCTTATTGATGCTCTGATGAAAGAGGTGCCAAAAGATTTTGAAATACTGGACAGAGGTTCCAATGGCATGAGTGGTCAAGGCAGGAAGGAAAATGTTCCGGATATGAAAGTTGTTGAGTTAGCCATGCACAGATGGTCAGGACAGCACAGCCGTCCATTTCTTTTTGGGATTTTGAGTGATGGAACAATTCTTTGTTATCATGCCTATCTTTATGAAAGTCTAGATGGTAATTCCAAACTTGAGGATTCAGTATCTGCAGGAGGACCAGCTGGTCTTAACAGTACTAATGTTTCCAGGCTTAGAAATTTGAGATTTGTTCGGGTTCCCATGGATGCATATGCCAGGGAGGAGACATTAAATGTATCCCCTTGTCAGCAAATTACCGTTTTCAAGAATATTGGTGGTTATCAAGGATTCTTTTTATCAGGGTCTAGACCGGCTTGGGTTATGATGTTGAGAGAGCGATTACGTGTTCATCCACAGCTATGTGATGGATCTATTGTTGCTTTTACGGTTCTTCACAATGTGAACTGCAACCATGGGCTCATATATGTTACATCACAGGGTGTTTTGAAGATATGCCAGTTGCCTTCTGGATCAAACTATGACTGCTACTGGCCTGTGCAGAAAATTCCACTGAAGGCCACCCCACATCAAGTAACATACTTTGCGGAGAAGAATCTATATCCACTTATTGTCTCAGTTCCAGTTCCTAAACCACTTAATCAAGTTGTTTCTCTAGTTGAACAAGATTCCAACCATCAGAGTGAGAGCCAGAATCTAAATCCTGATGAACAAAACCGTTTTTATTCTGTTGATGAATTTGAGGTTCGTATTATGGAGCCAGATAAGTCTGGTGGCCCTTGGCAAACAAAGGCAACAATTCCTATGCAAACTTCTGAAAATGCCCTTACTGTGAGAATGGTTACACTGCTGAATACATCCTCCAAAGAAAATGAAACACTTTTGGCTGTTGGCACTGCTTATGTGCAAGGAGAAGACGTGGCTGCTAGAGGACGTATCCTGCTGTTCTCTTTAGGAAAAAATACCGATAATCCTCAAACTCTGGTTTCAGAGGTGTACTCAAAGGAATTAAAAGGAGCTATATCTGCCTTGGCCTCTCTTCAGGGCCATCTGTTGATAGCATCTGGTCCAAAAATTATTTTGCACAAGTGGACTGGCACTGAGTTGAATGGGATTGCATTTTTTGATGCACCACCATTACATGTTGTGAGCTTAAATATAGTAAAAAACTTCATCCTCATTGGTGACATCCATAAAAGTATATACTTCCTTAGTTGGAAAGAGCAGGGTGCTCAACTTAGCTTATTAGCCAAAGATTTCGGTAATCTTGATTGCTTTGCGACGGAGTTTCTGATTGATGGGAGTACTCTGAGTCTCATGGTTTCAGATGATCAAAAGAACATCCAGGTCTTTTACTATGCACCGAAGATGTCCGAGAGTTGGAAAGGACAGAAGCTTCTTTCAAGAGCCGAATTTCATGTCGGTGCCCATGTGACTAAGTTCTTGAGGTTGCAGATGCTATCCACTTCTGATCGAAGTGGTTCTGGCTCCGATAAAACCAATCGATTTGCCTTATTGTTTGGTACCTTGGATGGCAGTATAGGTTGCATTGCGCCTCTCGATGAACTTACATTTCGAAGACTTCAATCATTACAGAGAAAGCTTGTTGATGCTGTACCCCATCTTGCTGGCCTGAATCCGAGAGCTTTCAGGCAGTTCCAATCAAATGGAAAGGCCCATCGGCCTGGCCCCGACAGTATAGTGGACTGTGAGCTTCTATGCCATTATGAAATGCTTCCGTTGGAGGAACAACTTGAAATCGCACACCAGGTTGGAACAACTAGATCACAAATCCTCTCAAATCTAAGTGATCTGGCTCTTGGAACTAGCTTCTTGTGA 4377 0.4343 MSFAAYKMMHCPTGIDNCASGFLTHSRADYVPRVPPLPADDLDPDSDWPNPATRRDLGPIPNLILTSANVLEVYAVRVHEESAKGPPAAAESSRGGVFDGVTGASLELVCHYRLHGNVEAMGVLSIGAGDGSRRRDSIILTFKDAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFANGPLVKVDPQGRCGGVLVYDLQMIILKATQAGSGLVGDDDTLGSGGAVAARIESSYMINLRDLDMRHVKDFTFVHGYIEPVMVILHECELTWAGRLSWKHHTCMISALSISTTLKQHPLIWSAVNLPHDAYKLLAVPSPIGGVLVIGANTIHYHSQSASCALALNSYAVSLDSSQEMPRSTFNVELDAANATWLSNDVALLSTKTGELLLLVLVYDGRVVQRLDLSKSKASVLSSGITTIGNSLFFLASRLGDSMLVQFSCGSGVSMSSSNNLKEEVGDIEVDAPSSKRLRRSPSDALQDLVSGEELSLYGSAPNRTESAQKTFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSICVLRQSIRPEVITEVELPGCKGIWTVYHKSSRSHSADSSKMANDDDEYHAYLIISLEARTMVLETADLLSEVTESVEYYIRGKTLAAGNLFGRRRVIQVFEHGARILDGSFMTHEKFFGSSNSESNSGSENVMAVSVSIADPYALIRMSDGSIRLLIGDPSTCTISVTTPASLESSKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGAAQDHGDIYCVVCYENGSLEIFDVPNFSCVFSVENFMSGKSHLIDALMKEVPKDFEILDRGSNGMSGQGRKENVPDMKVVELAMHRWSGQHSRPFLFGILSDGTILCYHAYLYESLDGNSKLEDSVSAGGPAGLNSTNVSRLRNLRFVRVPMDAYAREETLNVSPCQQITVFKNIGGYQGFFLSGSRPAWVMMLRERLRVHPQLCDGSIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSGSNYDCYWPVQKIPLKATPHQVTYFAEKNLYPLIVSVPVPKPLNQVVSLVEQDSNHQSESQNLNPDEQNRFYSVDEFEVRIMEPDKSGGPWQTKATIPMQTSENALTVRMVTLLNTSSKENETLLAVGTAYVQGEDVAARGRILLFSLGKNTDNPQTLVSEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFFDAPPLHVVSLNIVKNFILIGDIHKSIYFLSWKEQGAQLSLLAKDFGNLDCFATEFLIDGSTLSLMVSDDQKNIQVFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRSGSGSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQRKLVDAVPHLAGLNPRAFRQFQSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIAHQVGTTRSQILSNLSDLALGTSFL* 1459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g3400 1458 SUPERFAMILY WD40 repeat-like 655 812 IPR036322 GO:0005515
Ahy15g3400 1458 Pfam CPSF A subunit region 1093 1423 IPR004871 GO:0003676|GO:0005634
Ahy15g3400 1458 MobiDBLite consensus disorder prediction 35 54 - -
Ahy15g3400 1458 Gene3D - 59 455 IPR015943 GO:0005515
Ahy15g3400 1458 Gene3D - 982 1365 IPR015943 GO:0005515
Ahy15g3400 1458 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1 2 1449 - -
Ahy15g3400 1458 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 136 698 IPR018846 -
Ahy15g3400 1458 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 2 1449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g3400 Ahy-Chr15 156490150 156503391 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g3400 K14401 - gmx:100785543 2521.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3400 15 156490150 156503391 Ahy15g3400 15 156490150 156503391 ECH
Ahy15g3400 15 156490150 156503391 Ahy5g1885 5 87012094 87025407 hybridization