Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g3399 ATGGCTTCCATTCCCACCCTTTCCTCTTCTTGTATACCTTCAATCTCTCCTAATAATGTTTCAAACCCCACCACCAACAACAATAATCTACACTTCACATCTCTCTTCGGAACCAGAATCACCATTCATCGCCTCTCTCCAATCCCTCCATTCCCCTCGGTGAGTTGCAGCACCCGTGCCACCACTGCAACGGTGTCCTTTAGTCTTCCCACCACGAAACCCAAGGCGGATACAATTGACAAAATCCCACAGTGGTCTGCGAGGTCTATAAAGTCTTTTGCTATGGCAGAATTGGAAGCCAGGAAGCTGAAGTATCCCAACACAGGAACCGAAGCGCTTCTCATGGGGATTTTGGTAGAAGGAACAAGTAAAGCTGCAAAATTCTTGAGAGCCAATGGAGTTTCTCTTTTCAAAGTACGGGAAGAAACAGTAGAGCTACTTGGGAAATCTGACCTGTATTTCTTTAGCCCTGAGCATCCTCCATTGACCGAACCAGCTCAGAAAGCCCTTGACTGGGCTGTGGATGAGAAATTGAAGTCAGGTGATGGAGGCGAAATAACCGTGACTCATTTACTTCTTGGAGTTTGGGCCCAAGAAGGATCAGCAGGTCGCCAGATCTTGTCCACTTTAGGTTTCAATGATGAAAAAGCCAAAGAACTTGCCAAAGAAATTAATGAAGATGTCGATTTGAGCTTTAAGAAGCAAGCTTGA 711 0.4571 MASIPTLSSSCIPSISPNNVSNPTTNNNNLHFTSLFGTRITIHRLSPIPPFPSVSCSTRATTATVSFSLPTTKPKADTIDKIPQWSARSIKSFAMAELEARKLKYPNTGTEALLMGILVEGTSKAAKFLRANGVSLFKVREETVELLGKSDLYFFSPEHPPLTEPAQKALDWAVDEKLKSGDGGEITVTHLLLGVWAQEGSAGRQILSTLGFNDEKAKELAKEINEDVDLSFKKQA* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g3399 236 ProSiteProfiles Clp repeat (R) domain profile. 82 227 IPR004176 -
Ahy15g3399 236 Pfam Clp amino terminal domain, pathogenicity island component 185 222 IPR004176 -
Ahy15g3399 236 Pfam Clp amino terminal domain, pathogenicity island component 96 148 IPR004176 -
Ahy15g3399 236 SUPERFAMILY Double Clp-N motif 84 224 IPR036628 -
Ahy15g3399 236 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 12 233 - -
Ahy15g3399 236 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 12 233 IPR044217 -
Ahy15g3399 236 Gene3D - 84 233 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g3399 Ahy-Chr15 156485332 156487810 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g3399 - - gmx:100786582 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3399 15 156485332 156487810 Ahy15g3399 15 156485332 156487810 ECH
Ahy15g3399 15 156485332 156487810 Ahy5g1886 5 87026955 87029419 hybridization