Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g2673 ATGGCAGACGGACTTGTTCTCCGCGGCACCATGCGAGCCCACACGGACTCCGTCACAGCCATCGCAACCCCAATCGACAACTCCGACATGATCGTAACCGCCTCACGCGACAAGTCCATCATCCTCTGGCACCTCACCAAGGAGGAGCGCACCTACGGCGTCCCCCGCCGCAGGCTAACGGGTCATTCTCACTTCGTTCAGGACGTCGTTCTCTCTTCCGACGGCCAGTTCGCTCTCTCCGGCTCCTGGGATGGCGAGCTCCGCCTCTGGGACCTCGCGGCCGGAAAGTCCGCTCGCCGATTCGTCGGACACACAAAGGACGTTATGTCTGTTGCGTTCTCGGTTGATAACCGTCAGATCGTGTCGGCGTCTCGTGACCGTACGATTAAGTTGTGGAACACTCTTGGTGAGTGCAAATACACGATCCAGGACGGTGATGCGCATTCCGATTGGGTTTCTTGTGTTAGGTTTAGCCCTAACACTGTGCACCCTACCATTGTTTCTGCGTCTTGGGACAGGACTGTGAAAGTTTGGAACCTGACCAATTGCAAGCTGAGAAACACACTTGCTGGTCATTCTGGTTATGTGAACACAGTTGCTGTTTCACCTGATGGTTCCCTGTGTGCCAGTGGTGGCAAAGATGGAGTAATTTTACTGTGGGATTTGGCTGAAGGGAAGAAGCTCTACTCCCTTGATGCTGGTGCTATCATCCATGCTCTGTGCTTTAGTCCTAATAGGTACTGGCTATGCGCTGCTACTGAACAGAGCATTAAGATCTGGGATTTGGAGAGTAAGAGCATTGTGGAAGACTTGAAGGTTGATCTCAAGACCGAAGCTGATGCCGCCACCGGTGGGAACGCCAACAAGAAGAAGGTGATCTACTGCACCAGCTTGAACTGGAGTGCAGATGGAAGCACATTGTTCAGTGGTTACACTGATGGTGTGGTCAGAGTTTGGGGAATCGGACGGTTTTAG 975 0.5323 MADGLVLRGTMRAHTDSVTAIATPIDNSDMIVTASRDKSIILWHLTKEERTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAAGKSARRFVGHTKDVMSVAFSVDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPNTVHPTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLDAGAIIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEADAATGGNANKKKVIYCTSLNWSADGSTLFSGYTDGVVRVWGIGRF* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g2673 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 324 IPR001680 GO:0005515
Ahy15g2673 324 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 3 324 IPR045223 GO:0015935|GO:0043022
Ahy15g2673 324 SMART WD40_4 182 221 IPR001680 GO:0005515
Ahy15g2673 324 SMART WD40_4 94 133 IPR001680 GO:0005515
Ahy15g2673 324 SMART WD40_4 224 261 IPR001680 GO:0005515
Ahy15g2673 324 SMART WD40_4 286 320 IPR001680 GO:0005515
Ahy15g2673 324 SMART WD40_4 4 44 IPR001680 GO:0005515
Ahy15g2673 324 SMART WD40_4 52 91 IPR001680 GO:0005515
Ahy15g2673 324 SMART WD40_4 135 179 IPR001680 GO:0005515
Ahy15g2673 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 188 IPR001680 GO:0005515
Ahy15g2673 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
Ahy15g2673 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 288 324 - -
Ahy15g2673 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 133 IPR001680 GO:0005515
Ahy15g2673 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 92 - -
Ahy15g2673 324 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Ahy15g2673 324 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Ahy15g2673 324 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Ahy15g2673 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Ahy15g2673 324 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-LIKE PROTEIN 3 324 - -
Ahy15g2673 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Ahy15g2673 324 Gene3D - 4 324 IPR015943 GO:0005515
Ahy15g2673 324 SUPERFAMILY WD40 repeat-like 7 321 IPR036322 GO:0005515
Ahy15g2673 324 Pfam WD domain, G-beta repeat 146 179 IPR001680 GO:0005515
Ahy15g2673 324 Pfam WD domain, G-beta repeat 296 319 IPR001680 GO:0005515
Ahy15g2673 324 Pfam WD domain, G-beta repeat 228 261 IPR001680 GO:0005515
Ahy15g2673 324 Pfam WD domain, G-beta repeat 55 91 IPR001680 GO:0005515
Ahy15g2673 324 Pfam WD domain, G-beta repeat 9 43 IPR001680 GO:0005515
Ahy15g2673 324 Pfam WD domain, G-beta repeat 187 221 IPR001680 GO:0005515
Ahy15g2673 324 Pfam WD domain, G-beta repeat 99 133 IPR001680 GO:0005515
Ahy15g2673 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 226 - -
Ahy15g2673 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 182 - -
Ahy15g2673 324 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Ahy15g2673 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Ahy15g2673 324 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Ahy15g2673 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 45 - -
Ahy15g2673 324 ProSitePatterns Trp-Asp (WD) repeats signature. 166 180 IPR019775 -
Ahy15g2673 324 CDD WD40 7 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g2673 Ahy-Chr15 142962748 142965086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g2673 140 321 Miscellaneous Gene Families AT5G08390 26.087 1.93e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g2673 K14753 - gmx:100778205 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2673 15 142962748 142965086 Ahy15g2673 15 142962748 142965086 ECH