Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g1887 ATGGCGTCGCAAATGACGATCCTCTCAAGAGCCCGCTCCTTCATCCCAAAACCCACTCTCATTAAAACCATCTCCACCTTCCCGTCCCTCTTCCAAGAACCCCAACTCGCTACCCCTGAACCCACCCATCCAACCACCACCACCACCACCTCCCTCCCTCCAAACCCAGCCTCGGGATCCCCACTCTACAATGAAAACTGGCGAAACCCAATCCCACCATCTTCCTTCACTGCCTCCTCTATCACCCCTCAGAACTTGTTCACCAACCAGCAACAAGGGTTCCAAATGCAAACACTCTCCAACACCCACGACGCGACCTCGCTGATGAACCTCTTCGCTAGTTGGATGGCGTCGCAGCAGTGGGCCGACGTAAAGGCCCTGTTCGAGGCCTGGGTGAGGTCTCTCGACAAGAACGGCAAGCCCAACAAGCCCGACGTCGGTCTGTTTAACCATTACCTTAGGGCTAATCTCATGCTTGGGGCTTCTGCCGCCGAGTTGTTGGATCTACTTGCACAGATGGATGAATTCCAGATTGTCCCTAATACGGCGTCGTTTAACCTTGTCCTTAAGGCTATGTATCAGGCCAACGAAACCGTTGCTGCCGAGAAGCTCATCGAACGGATGCTGCAGACAGGCAATGAATCTCTCCCCGATGCTGAATCATATAACTTGGTCATTGGAATGCTCTTTCAGTCTGACCAGATTGATGCTGCATTCAAACATATAGATTTAAGTTTGAAATCTGGTTCTGTGTTGTCAATGAACGTATTTATGGAATGTGTGAAGAGTTGTGTCAAAAAGCACAGACTTGATTTATTGGTTACAATAATTGAAAGGTGCAGGACAACAGATCAGAACAAATCACTTTGTCCCTCCTGGAGTATGTGCAATTATATAGTTGAAATTGCTGTTCAAGAGGATAATAGCAAGTTAGCTTTTTATGGCCTGCAATTTATGGCTAAGTGGATGTTGAAGGGTGAAAGTGCAAGACCTGCCTTATTACTTTCCGTAGATGAAGGTTTAGTTGTGGCAGCTCTTGTGACTGCAGGTAGAACTTATAATTCCGAGCTGTTAGGAGCATCATGGGCAGTTTTGATCCGCTCATTGCGTAAAAATAAAGCTCCTAATCCAGAATCATATCTTGGAAAGATATATGCCCATGCATCCATGGGGAACCTACAAAAGGCTTTTGCTACTTTACATGATTATGAGTCTGCATATGGAGAATCCACTGAAGAAGTCGAAGACTTGTTCTGCCCGTTTACTTCTTTACATCCATTGGTTGTTGCATGCTCCAAGAAAGGTTTTGAGACTTTGGATACTGTTTTTTTTCAACTGGAGAATTTAAGCCGTGCAGAGAATCCTTATAAATCTGTTGCTGCCCTAAACTGCATCATTTTAGGTTGTGCAAATATATGGGACCTTGATCGTGCCTACCAGACTTTTGACGCAATTGGATCTGATTTTGGGTTGACCCCTAATATTCATTCATATAATGGGCTAATTTATGCTTTTGGGAAGCTCAAGAAGACAAGTGAGGCTATGAGGGTGTTCGAGCATCTCTTGAGTTTGGGTGTTAAGCCCAATGTAAAATCATATTCGCTCCTTGTTGATGCCCACCTGATTAACCGTGATGTCAAATCTTCCTTGGCAGTTCTTGATGATATGATTGCTGCGGGGTTTGAACCATCAAAAGAGACACTAAGCAAGGCCAGAAGGCGATGTATGCGAGAGATGGATTATGAAAGTGATGACAGATTGGGATCAATTGCAAGATCTCTGAAGATACCAATAGGTTCAGAAGGCCGTCGGAACCTTTTGTTTAATCTTGATTACAGTGTGGAATATGCTTAA 1854 0.4498 MASQMTILSRARSFIPKPTLIKTISTFPSLFQEPQLATPEPTHPTTTTTTSLPPNPASGSPLYNENWRNPIPPSSFTASSITPQNLFTNQQQGFQMQTLSNTHDATSLMNLFASWMASQQWADVKALFEAWVRSLDKNGKPNKPDVGLFNHYLRANLMLGASAAELLDLLAQMDEFQIVPNTASFNLVLKAMYQANETVAAEKLIERMLQTGNESLPDAESYNLVIGMLFQSDQIDAAFKHIDLSLKSGSVLSMNVFMECVKSCVKKHRLDLLVTIIERCRTTDQNKSLCPSWSMCNYIVEIAVQEDNSKLAFYGLQFMAKWMLKGESARPALLLSVDEGLVVAALVTAGRTYNSELLGASWAVLIRSLRKNKAPNPESYLGKIYAHASMGNLQKAFATLHDYESAYGESTEEVEDLFCPFTSLHPLVVACSKKGFETLDTVFFQLENLSRAENPYKSVAALNCIILGCANIWDLDRAYQTFDAIGSDFGLTPNIHSYNGLIYAFGKLKKTSEAMRVFEHLLSLGVKPNVKSYSLLVDAHLINRDVKSSLAVLDDMIAAGFEPSKETLSKARRRCMREMDYESDDRLGSIARSLKIPIGSEGRRNLLFNLDYSVEYA* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g1887 617 Pfam PPR repeat family 493 539 IPR002885 -
Ahy15g1887 617 MobiDBLite consensus disorder prediction 33 57 - -
Ahy15g1887 617 PANTHER OS07G0599000 PROTEIN 1 617 IPR044605 -
Ahy15g1887 617 Gene3D Tetratricopeptide repeat domain 99 322 IPR011990 GO:0005515
Ahy15g1887 617 Gene3D Tetratricopeptide repeat domain 441 586 IPR011990 GO:0005515
Ahy15g1887 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Ahy15g1887 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 529 563 IPR002885 -
Ahy15g1887 617 TIGRFAM PPR: pentatricopeptide repeat domain 496 530 IPR002885 -
Ahy15g1887 617 TIGRFAM PPR: pentatricopeptide repeat domain 532 564 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g1887 Ahy-Chr15 78669915 78674666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g1887 358 564 Glycosyltransferase AT1G05670 24.402 9.03e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g1887 - - lang:109360641 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g1887 15 78669915 78674666 Ahy15g1887 15 78669915 78674666 ECH