Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g1678 ATGACTGGTGGTAGTGGATACATGGTAGAAGTTACTGGACTTTCGCCAAAAACCACCGAGAAAGATCTCCACCATTTCTTCGCTTTCTCCGGCGCGATCGAGCACGTTGAAATCGTTAGGTCTGGTGATTGTGCTTGTACTGCATATGTGACATTCAAAGATGCATATTCTCAAGAAACTGCTTGCTTGCTTAGTGGAGCCACTATTTTAGATCAACGTGTATGCATAACGCGTTGGGGGCAGTGCGATGATGGCTATGGTTTTTGGAATCAGCCTTCCTACAACCGTGACGATGAGACTGCTTCAAATGTATGTTTTCAGACACAACATAGAGACCAATTTGTTTCCTCTGCTGGAGAAGCAGTTACTGCGGCTCAAGAAGTTGTGAAGACCATGCTAGCAAAGGGATATGTTCTCAGTAAGGACGCATTGGCTAAGGCTAGAGAGTTCGACGAGTCTCATCAGGTTTCTGCGACTGCAACAGCGAAAGTTTCTGAACTGAGCGAGAGACTTCGCCTCGCTGACAAGATATCAACAGGTGTTGGAGCTGTGAAATCTGTGGATCAGAAATATAATATCTCTGAAATAGCCAGGTCAGCTGCATCTGCAACTGGAAGATCGGTGGCAGCCGCCGGGGACTCTGTAGTAAATAGTAGCTATTTTTCGAAGGGAGCATTGTGGCTGTCAGGTGCTCTAACCCGAGCGGCTCATGTTGCTTCTGACTTGGGTGCTCGTGGCGATGGTCAGCACTGA 753 0.4741 MTGGSGYMVEVTGLSPKTTEKDLHHFFAFSGAIEHVEIVRSGDCACTAYVTFKDAYSQETACLLSGATILDQRVCITRWGQCDDGYGFWNQPSYNRDDETASNVCFQTQHRDQFVSSAGEAVTAAQEVVKTMLAKGYVLSKDALAKAREFDESHQVSATATAKVSELSERLRLADKISTGVGAVKSVDQKYNISEIARSAASATGRSVAAAGDSVVNSSYFSKGALWLSGALTRAAHVASDLGARGDGQH* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g1678 250 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 5 247 - -
Ahy15g1678 250 Gene3D - 4 81 IPR012677 -
Ahy15g1678 250 CDD RRM_Vip1_like 9 77 IPR034360 -
Ahy15g1678 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 72 IPR000504 GO:0003723
Ahy15g1678 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 81 IPR000504 GO:0003723
Ahy15g1678 250 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 5 247 - -
Ahy15g1678 250 SUPERFAMILY RNA-binding domain, RBD 7 78 IPR035979 GO:0003676
Ahy15g1678 250 SMART rrm1_1 8 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g1678 Ahy-Chr15 40453184 40455592 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g1678 - - gmx:100805907 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g1678 15 40453184 40455592 Ahy15g1678 15 40453184 40455592 ECH