Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g1544 ATGGTGGTCGTGGCAACCGCCCCCGCCACCAGCACTCCATTCATTCTCTCACTCCTTCCAACTCGCCACACTCCTCTCCCATTTACACGAGCCGCCACTACTCTCCCCTTCTCTCTTCTACTTCGCCACCGTTCGGTCCTCTCTTCCCTCCGTTTCCAAATCTCCTTTAAGTCCCCATCCTCTACGCTTCACGAGGCCGACGAAGACGAAGAAGGCGAACAAGATTTTGAAGAAAATGAAGAAGATGATGAATTCGAATACGACGACGACGAAGATGTTGCTGCTGATGAATACGACGACGTTTCGAGCGAGGCGTACGATGGCGCCGTTTCCGACGAAGGCGAGGAAGCGTTCGAGGCTGCTAGACTTGGCAACGACGGAACGTTCAAGTGGCAGAGAGTTGAGAAGCTCTGCAAAGAGGTCAGGGAGTTTGGCTCCGATATCATCGACGTCGACGAACTTGCCTCCGTTTACGATTTCCGAATCGATAAGTTTCAGCGGCTGGCAATACACGCTTTTCTAAGAGGCTCATCGGTTGTGGTGTCGGCTCCAACGAGCAGCGGGAAGACTCTGATAGCGGAATCTGCGGCGGTTGCCACTGTTGCCAGGGGACGCCGGATATTCTACACGACGCCGCTCAAGGCATTGTCCAATCAGAAGTTCCGAGAATTTCGGGAGACTTTTGGAGACAACAATGTTGGCCTTCTTACAGGAGATTCCGCTGTCAACAGGGATGCTCAAGTCTTGATTATGACCACAGAGATTTTGCGCAACATGTTATATCAGAGTGTTGGTAATATTTCTTCAGGAGGCGGACTTCTCCATGTTGATGTGATTGTTTTGGATGAAGTTCATTACCTTAGTGACATATCTCGTGGTACTGTTTGGGAAGAGATTGTTATTTATTGCCCTAAAGAAGTTCAACTAATTTGTTTGTCAGCAACTGTTGCAAATCCTGATGAGTTGGCTGGCTGGATTGGCCAGATTCATGGTTCAACAGAATTGGTAACATCATCAAAACGCCCAGTTCCACTAACTTGGCATTTCTCTTTGAAAAATTCCTTATTGCCACTTCTTGATGAGAAAGGAACACGCATGAACAGGAAGCTGTCTCTCAATTATTTACAACTTCAAGGTGCAGGGGTCAAATCTTACAATGATGATTGGCCTAGAAGAAAGAATTCCCGGAGACGAGGAACGAGGTACGATAGTGATGGTAGCACACTGGAAAATCGTTCTCTTTCAAAGAATAATATAAATGCAATTCGTCGTTCACAGGTTCCTCAAATAATTGATACTCTATGGCAACTTCAGTCTAGGGATATGCTGCCAGCTATATGGTTTATATTTAGCAGAAAGGGCTGTGATGCAGCTGTGCAATATGTTGAAAATTGCAATCTTTTAGATGAGTGTGAAACAAGTGAGGTTGAACTTGCCTTGAAGAGGTTCCGCATTCAATATCCTGATGCTGTCAGAGAAACTGCTGTGAAAGGACTTCTGCAAGGAGTTGCTGCACATCATGCGGGTTGTCTTCCCTTGTGGAAAGCTTTCATTGAAGAATTGTTTCAAAGAGGGCTTGTCAAGGTTGTTTTTGCAACAGAAACACTGGCTGCAGGAATCAACATGCCAGCTAGAACTGCTGTTATTTCATCCCTCAGCAAAAGAGGTGATAGTGGACGTGTCCAGTTAAGCACAAATGAACTGCTTCAGATGGCTGGGCGTGCTGGGCGAAGGGGCATTGATGAAAGTGGTCATGTGGTGCTCATACAGACACCTAATGAGGGTGCTGAAGAGTGCTGCAAGGTGCTGTTTGCTGGACTTGAGCCCCTAGTCTCACAATTTACTGCTTCGTTTGGAATGGTTTTAAATCTTCTTGCAGGTGTGAAAGCCATTCATAGGTCAAATGAGTCAGATGATGGGAGACCTTCATCAGGGAGAACTTTGGAAGAAGCTAGGAAGTTAGTTGAGCAGAGTTTTGGAAATTACGTTAGTAGCAATGTTATGCTGGCTGCTAAAGAGGAAATTAATAAAATTGAGAAAGAAATTGAGATTCTGATGTCAGAAATAACTGATGAAGCCATAGATAAAAGAAGCAGGAAAGCTTTATCACAGCGACAATATAAGGAGATTGCAGAATTGCAGGAGCAGTTAAGGGCAGAAAAACGTGTTCGGGCTGAACTGCGTAAACAGATGGAAGCAACAAGAATATCTGCTCTAAAACCTTTGTTGGAAGACCCTGAAAATGGACATCTACCATTTTTGTGCTTGCAGTACACAGATTCTGAAGGAACTCAACATTCACTGCCTGCTGTGTTTCTGGGGAAGGTTGACTCACTTAATGCTTCAAAACTTAAGAAATTGGTATCTTCTGCTGATTCTTTTGCAATAAATTTAGGTGATGCGGAACCAAGCATTACTGATTCAGTATTGGATGATGGCCTTGAACCATCATACCATGTGGCTCTTGGTTCTGATAACTCTTGGTATCTATTTACAGAAAAGTGGATTAAAACAGTATATGGGACTGGCTTTCCTAACGTTCCATTGGCTCAAGGGGATGCTCTACCACGAGAAATTATGAGCACTCTCCTTGATAAGGAGGACATGAAGTGGGATAATCTTGCGCAATCTGCCTATGGTGGTTTATGGTTCATGGAAGGCTCTTTAGATACATGGTCTTGGAGTCTGAATGTTCCTGTTTTGAGTAGCTTCTCTGAAAGTGATGAGCTACTGCTAAAGTCTCAAGCCTACAGAGATGCTGTAGAGCGTTACAAGGATCAAAGAAATAAAGTTTCACGCTTGAAGAAAAAGATTTCTCGTACAGAAGGCTACAAAGAATACAGTAAAGTCATAGACGCAGTCAAGTTTACTGAGGAGAAAATCAGGCGCTTGCAGAATAGATCAAAACGTTTAACTAATCGAATAGAACAAATTGAACCCTCCGGATGGAAGGAGTTTATGCAGGTTAGCAATGTCATACATGAAACCAGAGCATTGGACAAAAACACGCAGGTCATATTTCCACTTGGGGAAACTGCAGCAGCAATCCGAGGAGAAAACGAGCTTTGGCTTGCAATGGTTCTTCGCAGCAAAATTCTTCTAGAGCTAAAACCTCCACAACTTGCTGCAGTTTGTGCAAGCTTGGTCTCTGAGGGTATCAAACTCCGACCATGGAAGAATAACAGTTACATTTACGAGCCAACCACAACAGTTATGAATGTCATAAAGTTATTGGATGAACAAAGAAGCGCCCTGTTGACCATTCAGGAGAAACATGGGGTGATGATACCTTGCTGTTTGGATAGCCAGTTTTGCGGTATGGTTGAAGCATGGGCTTCTGGGTTGACTTGGAGAGAGATAATGATGGATTGTGCGATGGACGAAGGCGATCTTGCTCGCCTCCTTCGTAGGACTATTGATCTGCTAGCTCAGATTCCAAAATTGGCAGACATTGATCCTTTGTTGCAGCGCAATGCAAAGGCTGCATATGATGCCATGGACCGGCCGCCAATTAGTGAGCTTGCCGGGTAG 3531 0.446 MVVVATAPATSTPFILSLLPTRHTPLPFTRAATTLPFSLLLRHRSVLSSLRFQISFKSPSSTLHEADEDEEGEQDFEENEEDDEFEYDDDEDVAADEYDDVSSEAYDGAVSDEGEEAFEAARLGNDGTFKWQRVEKLCKEVREFGSDIIDVDELASVYDFRIDKFQRLAIHAFLRGSSVVVSAPTSSGKTLIAESAAVATVARGRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAVNRDAQVLIMTTEILRNMLYQSVGNISSGGGLLHVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGSTELVTSSKRPVPLTWHFSLKNSLLPLLDEKGTRMNRKLSLNYLQLQGAGVKSYNDDWPRRKNSRRRGTRYDSDGSTLENRSLSKNNINAIRRSQVPQIIDTLWQLQSRDMLPAIWFIFSRKGCDAAVQYVENCNLLDECETSEVELALKRFRIQYPDAVRETAVKGLLQGVAAHHAGCLPLWKAFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRGDSGRVQLSTNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEECCKVLFAGLEPLVSQFTASFGMVLNLLAGVKAIHRSNESDDGRPSSGRTLEEARKLVEQSFGNYVSSNVMLAAKEEINKIEKEIEILMSEITDEAIDKRSRKALSQRQYKEIAELQEQLRAEKRVRAELRKQMEATRISALKPLLEDPENGHLPFLCLQYTDSEGTQHSLPAVFLGKVDSLNASKLKKLVSSADSFAINLGDAEPSITDSVLDDGLEPSYHVALGSDNSWYLFTEKWIKTVYGTGFPNVPLAQGDALPREIMSTLLDKEDMKWDNLAQSAYGGLWFMEGSLDTWSWSLNVPVLSSFSESDELLLKSQAYRDAVERYKDQRNKVSRLKKKISRTEGYKEYSKVIDAVKFTEEKIRRLQNRSKRLTNRIEQIEPSGWKEFMQVSNVIHETRALDKNTQVIFPLGETAAAIRGENELWLAMVLRSKILLELKPPQLAAVCASLVSEGIKLRPWKNNSYIYEPTTTVMNVIKLLDEQRSALLTIQEKHGVMIPCCLDSQFCGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTIDLLAQIPKLADIDPLLQRNAKAAYDAMDRPPISELAG* 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g1544 1176 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 441 626 IPR001650 -
Ahy15g1544 1176 Coils Coil 703 730 - -
Ahy15g1544 1176 Gene3D - 958 1168 - -
Ahy15g1544 1176 Pfam DSHCT (NUC185) domain 1005 1171 IPR012961 -
Ahy15g1544 1176 Gene3D - 342 610 IPR027417 -
Ahy15g1544 1176 MobiDBLite consensus disorder prediction 66 89 - -
Ahy15g1544 1176 SMART DSHCT_2 1001 1175 IPR012961 -
Ahy15g1544 1176 MobiDBLite consensus disorder prediction 386 405 - -
Ahy15g1544 1176 Coils Coil 668 688 - -
Ahy15g1544 1176 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 52 1172 - -
Ahy15g1544 1176 Coils Coil 947 974 - -
Ahy15g1544 1176 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 170 334 IPR014001 -
Ahy15g1544 1176 SMART helicmild6 493 579 IPR001650 -
Ahy15g1544 1176 MobiDBLite consensus disorder prediction 386 409 - -
Ahy15g1544 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 593 IPR027417 -
Ahy15g1544 1176 Gene3D - 125 341 IPR027417 -
Ahy15g1544 1176 SMART ultradead3 158 348 IPR014001 -
Ahy15g1544 1176 CDD SF2_C_Ski2 423 591 - -
Ahy15g1544 1176 Pfam DEAD/DEAH box helicase 165 317 IPR011545 GO:0003676|GO:0005524
Ahy15g1544 1176 Coils Coil 917 937 - -
Ahy15g1544 1176 MobiDBLite consensus disorder prediction 61 89 - -
Ahy15g1544 1176 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH15 CHLOROPLASTIC 52 1172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g1544 Ahy-Chr15 30693829 30700012 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g1544 K26077 - gmx:100780908 1825.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g1544 15 30693829 30700012 Ahy15g1544 15 30693829 30700012 ECH