Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g1540 ATGATGATATCTAAAATGAGAACCAATTTTCACTCACTTCCTCTTCTATTGTTTGCCCTTTACCTTCTATGGGGGAAATGTAGATCAGATCCTGATCCACTTCAAGATTATTGTGTTGCCAATAACAAGAACAATTTTTTCATCAATGGGGTTCCTTGTATTAACCCTAAAGAAGTTTCGGCATCCGATTTTGCCACGTCAGCATTATCCAAACCAGGTAACACAAGCAACACATTTGGGTTTGCAGTTACCCCCACCAACACAGTAAACCTTCCCGGGCTCAACACATTGGGCCTTGTGTTGGTCCGGGTCGACATCGAGGCCGACGGGGTAATTCCACCTCACTCGCACCCGCGGGCCTCGGAAGTCACAACTTGCCTAAAGGGCCAGCTTCTAGTGGGATTTATAGACACATCTAGCCGTGTGTTCACTCAAAACCTAAGGCCCGGTGAGTCATTTGTGTTCCCAAAGGGCCTGATTCATTTCCTTTACAATAGAGATTCTAAGGAACCGGTTCTTGCTTTGTCTGGTCTCAATAGCCAGAACCCTGGTGCACAAGTTGCATCCGTTGCAACATTTGCTAGCAAGCCTCCAATTCTTAATGCAATTCTTGCCAAGGCATTTCAGATTAGTGCACAAGAAGTAGAAATAATACGTCAGAAACTTGAAGGGTGA 675 0.4504 MMISKMRTNFHSLPLLLFALYLLWGKCRSDPDPLQDYCVANNKNNFFINGVPCINPKEVSASDFATSALSKPGNTSNTFGFAVTPTNTVNLPGLNTLGLVLVRVDIEADGVIPPHSHPRASEVTTCLKGQLLVGFIDTSSRVFTQNLRPGESFVFPKGLIHFLYNRDSKEPVLALSGLNSQNPGAQVASVATFASKPPILNAILAKAFQISAQEVEIIRQKLEG* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g1540 224 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 1 MEMBER 1 15 222 - -
Ahy15g1540 224 SMART Cupin_1_3 67 216 IPR006045 -
Ahy15g1540 224 CDD cupin_OxOx 30 222 - -
Ahy15g1540 224 ProSitePatterns Germin family signature. 110 123 IPR019780 GO:0030145
Ahy15g1540 224 Gene3D Jelly Rolls 29 224 IPR014710 -
Ahy15g1540 224 SUPERFAMILY RmlC-like cupins 30 219 IPR011051 -
Ahy15g1540 224 Pfam Cupin 69 215 IPR006045 -
Ahy15g1540 224 PRINTS Germin signature 145 165 IPR001929 GO:0030145
Ahy15g1540 224 PRINTS Germin signature 115 135 IPR001929 GO:0030145
Ahy15g1540 224 PRINTS Germin signature 179 194 IPR001929 GO:0030145
Ahy15g1540 224 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 15 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g1540 Ahy-Chr15 30569243 30570642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g1540 6 222 Miscellaneous Gene Families AT5G39130 42.986 6.98e-55 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g1540 - - lja:Lj2g3v1365980.1 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g1540 15 30569243 30570642 Ahy15g1540 15 30569243 30570642 ECH