Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g1517 ATGGGAATTCTTCAATGTCCCTCTTGTTGCCACTACTCATCATCATCACAACACCATGAAGATCACCAACAACAATCTCATCACTCAAATTCCAACAATACCCTTCTTCATTCAGAATCATCAACCTCTTCCTCTCTTTCTTCACAACCAAGTCTACCTTCAGTTCCTTCCCTAACAACCTCACAACAACTCCAACAACAAGAGATTGTAACCACCATCAACGGTCACTCCTCCGCAATCTTCTGCCTCGCACTCCACGGTAAGTTTCTCTACAGCGGATCCTCCAGCAGTGAGATAAGGAGACACCGAAAAGACACTTTTGCCCCTGATCACAACGTTCTTGCAACAACCACCAACAGTGCCGTTAAGTCCATAACCGTTTTCGGTGGTAAGCTTTTCACCGCTCACCAAGACCACAAAATCCGCGTCTGGAAAATCCAAGAACAAGAACAAGAACCCTACAAATGCATAGCGACGCTTCCAACGTTCAACGACCGAATCTGGAAGCTCTTCTCTTCCAAGAACTACGTTCAAGTTCGGCGCCACAAGAAGTCCACGTGGGTGCACCACGTGGACACAGTCTCCGCCGTCGCCATATCCGTCGATGGAACACTCTTATACTCCGCTTCGTGGGATCGGACCTTCAAGATTTGGCGAACCTCCGATTTCAAGTGCTTGGAGTCCGTTAACGCGCACGAAGACGCCATCAACGCGCTGGCGGTTTCATGCGCCGGTGTAGTTTACACTGGATCAGCTGATAAGAAGATAAAAATATGGAAGAAACTTGAGAATTCAAAGAGGCATGCGCTTGTGGGGACGTTGGAGAAGCATAAATCGGCGGTGAACGCGTTGGCGCTCAGCGCCGATGGGTTGGTTTTGTACTCCGGCGCGTGTGATAGGTCGATTCTGGTGTGGGAGAAGGAGAAGGAGGAGGAAGGAGGAGGCGATGAAAATGTGAAGATGGTGGTTGTTGGAGCGTTGAGAGGACACACGAAAGCAATACTGTGTTTGGTTGCAATGGCGGATTTGGTGGTGAGTGGTTCGGCGGATAATAGTGTTAGGGTGTGGCGGCGGAGAGGGATTAGTGTTAATAGTGAGAAGAGTTGTTATTCTTGTTTGGCTGTGTTGGAAGGACATAGAAGACCGGTGAAGTGTTTGGCTGTGGCGGTTGAATCCGCCGACAACTATGGTGGTGATGATGAGAATAGTGGTGGTGGCGGTGGTGGTAATTCTTATTTGGTTTATAGTGGTAGTTTGGACTGTGGCATTAGAGTTTGGAGAATAAGGGTTCCCTTGTTTTGA 1302 0.4854 MGILQCPSCCHYSSSSQHHEDHQQQSHHSNSNNTLLHSESSTSSSLSSQPSLPSVPSLTTSQQLQQQEIVTTINGHSSAIFCLALHGKFLYSGSSSSEIRRHRKDTFAPDHNVLATTTNSAVKSITVFGGKLFTAHQDHKIRVWKIQEQEQEPYKCIATLPTFNDRIWKLFSSKNYVQVRRHKKSTWVHHVDTVSAVAISVDGTLLYSASWDRTFKIWRTSDFKCLESVNAHEDAINALAVSCAGVVYTGSADKKIKIWKKLENSKRHALVGTLEKHKSAVNALALSADGLVLYSGACDRSILVWEKEKEEEGGGDENVKMVVVGALRGHTKAILCLVAMADLVVSGSADNSVRVWRRRGISVNSEKSCYSCLAVLEGHRRPVKCLAVAVESADNYGGDDENSGGGGGGNSYLVYSGSLDCGIRVWRIRVPLF* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g1517 433 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 6 431 IPR045182 -
Ahy15g1517 433 Gene3D - 264 431 IPR015943 GO:0005515
Ahy15g1517 433 Gene3D - 59 183 IPR015943 GO:0005515
Ahy15g1517 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 260 IPR001680 GO:0005515
Ahy15g1517 433 CDD WD40 70 427 - -
Ahy15g1517 433 MobiDBLite consensus disorder prediction 27 60 - -
Ahy15g1517 433 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Ahy15g1517 433 PRINTS G protein beta WD-40 repeat signature 344 358 IPR020472 -
Ahy15g1517 433 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Ahy15g1517 433 PANTHER VEGETATIVE INCOMPATIBILITY PROTEIN HET-E-1-LIKE ISOFORM X1 6 431 - -
Ahy15g1517 433 Pfam WD domain, G-beta repeat 224 260 IPR001680 GO:0005515
Ahy15g1517 433 Pfam WD domain, G-beta repeat 69 145 IPR001680 GO:0005515
Ahy15g1517 433 Pfam WD domain, G-beta repeat 325 356 IPR001680 GO:0005515
Ahy15g1517 433 Pfam WD domain, G-beta repeat 187 218 IPR001680 GO:0005515
Ahy15g1517 433 Pfam WD domain, G-beta repeat 271 305 IPR001680 GO:0005515
Ahy15g1517 433 Pfam WD domain, G-beta repeat 371 426 IPR001680 GO:0005515
Ahy15g1517 433 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 327 356 - -
Ahy15g1517 433 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 274 306 - -
Ahy15g1517 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Ahy15g1517 433 Gene3D - 184 263 IPR015943 GO:0005515
Ahy15g1517 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 306 IPR001680 GO:0005515
Ahy15g1517 433 SMART WD40_4 320 357 IPR001680 GO:0005515
Ahy15g1517 433 SMART WD40_4 222 260 IPR001680 GO:0005515
Ahy15g1517 433 SMART WD40_4 66 103 IPR001680 GO:0005515
Ahy15g1517 433 SMART WD40_4 110 145 IPR001680 GO:0005515
Ahy15g1517 433 SMART WD40_4 180 219 IPR001680 GO:0005515
Ahy15g1517 433 SMART WD40_4 369 427 IPR001680 GO:0005515
Ahy15g1517 433 SMART WD40_4 267 306 IPR001680 GO:0005515
Ahy15g1517 433 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 218 - -
Ahy15g1517 433 MobiDBLite consensus disorder prediction 17 60 - -
Ahy15g1517 433 SUPERFAMILY WD40 repeat-like 64 427 IPR036322 GO:0005515
Ahy15g1517 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 356 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g1517 Ahy-Chr15 29638340 29640004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g1517 134 365 Acyl Lipid Metabolism Gene Families AT3G18860 23.755 9.42e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g1517 - - gmx:100784166 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g1517 15 29638340 29640004 Ahy15g1517 15 29638340 29640004 ECH