LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy15g1444	ATGAATCCCTTCTCTTCAGGAACCCGCTTGAGGGACATGATTCGGGCCATACGTGCTTCCAAGACTGCAGCCGAAGAACGTGCTGTAGTTAGAAAAGAATGTGCTGCCATTCGTGCTGCAATAAATGAAAATGATCAAGATTATAGGCATCGGAATTTGGCTAAGCTAATGTTTATCCACATGCTTGGCTACCCCACTCATTTTGGTCAAATGGAATGCCTCAAGTTGATAGCATCACCTGGATTTCCGGAGAAGAGAATAGGTTACCTTGGCCTCATGTTGCTACTTGATGAAAGACAAGAAGTTCTAATGTTGGTCACCAATTCTTTAAAACAAGATCTTAATCACACAAATCAGTATATAGTGGGACTTGCTCTTTGTGCTTTAGGAAATATTTGTTCAGCAGAAATGGCTCGTGATCTTGCGCCAGAGGTTGAAAGATTGCTGCAATTTCGTGACCCAAATATTCGGAAGAAGGCAGCATTATGTTCTATAAGGATCATCAAGAAAGTTCCAGACTTGGCAGAAAATTTTATCAATTCTGCTACTGCCTTACTAAGGGAGAAGCATCATGGAGTTTTGATCACTGGGGTTCAGCTTTGTACAGATCTGTGTAAAATTAGCCCAGAAGCCCTTGAACATGTTCGAAAGAAATGCACAGATGTTTTGGTCAGAACTCTTAGAGATCTAGCAAACAGTCCTTATTCACCAGAATATGATATTGCTGGCATCACAGACCCATTTCTCCATATCAGATTGCTTAAACTTTTGCGAGTGCTGGGCGAAGGTGATGCTGATGCTAGCGACTCTATGAATGACATACTTGCCCAGGTGGCTACAAAGACTGAGTCAAATAAAGTTGCAGGAAACGCCATTTTATATGAATGTGTTCAAACAATTATGAGCATTGAAGATAATGGAGGCTTGCGTGTTCTTGCCATCAACAGCCTGGGAAGATTCTTGTCGAACCGTGATAACAATATCAGATACGTGGCACTAAATATGCTGATGAAGGCTGTAACTGCTGATGGTCAGGCAGTGCAGAGGCACCGTGCAACAATTCTGGAGTGTGTAAAGGATTCAGATGCTTCTATTCGGAAAAGAGCACTTGAACTTGTTTACGTTCTGGTAAATGAAACAAATGTGAAGCCATTAGCAAAAGAACTAATAGATTATCTGGAAGTCAGTGAAAATGATTTCAGGGGAGACCTTACAGCCAAAATTTGCTCCATAGTTTCAAAGTTTTCCCCAGAGAAGATCTGGTACATTGATCAGATGCTCAAGGTTCTGTCTGAGGCTGGAAATTATGTAAAAGATGAAGTATGGCATGCCCTAATTGTTGTAATAACAAATGCTACTGAGCTTCATGGATATACCGTAAGAGCATTATACAGAGCATTTCAGACATCAGCTGAACAGGAATCTCTAGTTCGAGTTACAGTGTGGTGCATTGGAGAGTATGGTGACTTATTAGTCAATAATGTTGGAATGCTTGACATAGAAGATCCAATTACGCAGGTGACTGAGTCGGATGCTGTGGATGTCTTGGAGATTGCTATAAAACGCCATGAATCAGATCTTACCACAAAAGCAATGGCTTTGGTTGCCCTATTAAAGTTTTCTTCACGTTTTCCTTCATGTTCAGAGAGGATCAAGGAAATCATTGTTCAGTTCAAAGGGAACCTCATGCTTGAATTGCAGCAGAGAGCTATAGAATTCAATTCAATTTTAGCAAAGCATCAGAATATTAGGTCTACTCTTGTAGAAAGGATGCCAGTTTTGGATGAGGCAACTTTTATTGGTAGGAAAGCTGGGTCTTTGCCAGGTGCAGCTTCAACTACAACAATGCCTTCAGTTGGTATTCCAAATGGAGAAGCTAAACCTGCAGCTCCACTTATAGATCTACTCGATCTAAGTTCAGATGATGCTCCAGCACCTAGTTCTTCTGGTGGTGATCTTCTTCATGACCTTCTTGGTGTTGATCTGTCACCAGCTCCTCAACAATCAGGTGCAGGTCAACCTTCAAAAAGTGGGACAGATGTTCTTTTGGATCTATTGTCCGTTGGATCACCTGCACAGAGCAGCTCATCTACAGTTGACATTTTATCTTCCAATACAAATGGCAAATCTCCAGTTTCACCATTAGATGATATTTCATCACTTTCGCTTTCTTCAAGAGCAAATTCAAATGCTGGAGCTGCTCCTATGATGGATTTATTGGATGGTTTTGGTCCCAGCCCATCCAAAGAAAACAATGGACCAGTTTATCCATCCATAACAGCATATGAGAGTAGCTCCTTGAGGTTGACATTCAGTTTCTCAAAACAACCAGGAAACCCAGAAACAACAAATATCCAGGCTACCTTTACGAATTTGTCCTCTACTGTCTATACAGACTTTGTTTTCCAGGCAGCAGTTCCAAAGTTTCTTCAACTGCACTTAGATCCAGCTAGTAGCAATACTTTGCCTGCTGCTGGAAATGGATCCGTGACACAAAGTTTGAAAGTCACCAACAGCCAACATGGAAAGAAAAATCTTGTCATGCGCATAAGGATAGCTTACAAGTTGAATGGCAAGGATACACTGGAAGAAGGCCAAATCAATAATTTCCCTCGCGAATTATGA	2625	0.4126	MNPFSSGTRLRDMIRAIRASKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIKKVPDLAENFINSATALLREKHHGVLITGVQLCTDLCKISPEALEHVRKKCTDVLVRTLRDLANSPYSPEYDIAGITDPFLHIRLLKLLRVLGEGDADASDSMNDILAQVATKTESNKVAGNAILYECVQTIMSIEDNGGLRVLAINSLGRFLSNRDNNIRYVALNMLMKAVTADGQAVQRHRATILECVKDSDASIRKRALELVYVLVNETNVKPLAKELIDYLEVSENDFRGDLTAKICSIVSKFSPEKIWYIDQMLKVLSEAGNYVKDEVWHALIVVITNATELHGYTVRALYRAFQTSAEQESLVRVTVWCIGEYGDLLVNNVGMLDIEDPITQVTESDAVDVLEIAIKRHESDLTTKAMALVALLKFSSRFPSCSERIKEIIVQFKGNLMLELQQRAIEFNSILAKHQNIRSTLVERMPVLDEATFIGRKAGSLPGAASTTTMPSVGIPNGEAKPAAPLIDLLDLSSDDAPAPSSSGGDLLHDLLGVDLSPAPQQSGAGQPSKSGTDVLLDLLSVGSPAQSSSSTVDILSSNTNGKSPVSPLDDISSLSLSSRANSNAGAAPMMDLLDGFGPSPSKENNGPVYPSITAYESSSLRLTFSFSKQPGNPETTNIQATFTNLSSTVYTDFVFQAAVPKFLQLHLDPASSNTLPAAGNGSVTQSLKVTNSQHGKKNLVMRIRIAYKLNGKDTLEEGQINNFPREL*	875

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy15g1444	874	Pfam	Adaptin C-terminal domain	757	871	IPR008152	GO:0006886\|GO:0016192
	Ahy15g1444	874	SUPERFAMILY	ARM repeat	25	594	IPR016024	-
	Ahy15g1444	874	MobiDBLite	consensus disorder prediction	692	716	-	-
	Ahy15g1444	874	ProSiteProfiles	Gamma-adaptin ear (GAE) domain profile.	754	871	IPR008153	-
	Ahy15g1444	874	PIRSF	AP1_gamma	6	874	IPR017107	GO:0005794\|GO:0016192\|GO:0030121
	Ahy15g1444	874	Pfam	Adaptin N terminal region	27	579	IPR002553	GO:0006886\|GO:0016192\|GO:0030117
	Ahy15g1444	874	PANTHER	AP-1 COMPLEX SUBUNIT GAMMA	5	874	-	-
	Ahy15g1444	874	SUPERFAMILY	Clathrin adaptor appendage domain	733	872	IPR013041	-
	Ahy15g1444	874	Gene3D	-	2	595	IPR011989	-
	Ahy15g1444	874	Gene3D	-	743	873	-	-
	Ahy15g1444	874	SMART	alpha_adaptinc2	751	871	IPR008152	GO:0006886\|GO:0016192
	Ahy15g1444	874	MobiDBLite	consensus disorder prediction	638	679	-	-
	Ahy15g1444	874	PANTHER	ADAPTIN, ALPHA/GAMMA/EPSILON	5	874	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy15g1444	Ahy-Chr15	26588616	26599584	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy15g1444	K12391		-	gmx:100802164	1464.9

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy15g1444	15	26588616	26599584	Ahy15g1444	15	26588616	26599584	ECH