Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g1408 ATGAATGAGTTGAAATCAGATCGGTTTGAAAGAGAAGAAAGAGAACCCACGCTCTTTCTCTCAGAGTCGCGGTTCCATCACCGCATTCCTCTTAGAGAAGCTTCCAGAGTGTTCAGAGGAAGGAGCAAGATGATTATCCCAGTCCGTTGCTTCACCTGCGGAAAGGTCATCGGAAACAAATGGGATGCCTATTTGGACCTTCTCCAGTCAGATTACTCTGAAGGAGATGCGCTTGATGCTTTGGGGCTGGTTCGTTATTGTTGTAGGCGTATGCTTATGACGCATGTTGACCTCATCGAGAAGCTCCTGAATTACAACACTCTTGACAAGTCTGATCCCAGTTAG 345 0.4667 MNELKSDRFEREEREPTLFLSESRFHHRIPLREASRVFRGRSKMIIPVRCFTCGKVIGNKWDAYLDLLQSDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDPS* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g1408 114 ProSitePatterns RNA polymerases N / 8 Kd subunits signature. 45 54 IPR020789 GO:0003677|GO:0003899|GO:0006351|GO:0008270
Ahy15g1408 114 Hamap DNA-directed RNA polymerase subunit Rpo10 [rpo10]. 45 99 IPR000268 GO:0003677|GO:0003899|GO:0006351
Ahy15g1408 114 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER 44 114 IPR000268 GO:0003677|GO:0003899|GO:0006351
Ahy15g1408 114 Gene3D - 44 112 - -
Ahy15g1408 114 Pfam RNA polymerases N / 8 kDa subunit 45 102 IPR000268 GO:0003677|GO:0003899|GO:0006351
Ahy15g1408 114 SUPERFAMILY RNA polymerase subunit RPB10 44 106 IPR023580 -
Ahy15g1408 114 PANTHER - 44 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g1408 Ahy-Chr15 24724178 24725552 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g1408 K03007 - gmx:100527000 150.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g1408 15 24724178 24725552 Ahy15g1408 15 24724178 24725552 ECH