Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g1334 ATGGCAGCGTCTCTGGGAGTGTTTTCCGGAATGAGCTTCGTGGCGGCCGAGGCGCCCTCAGGAAGCCTCTTCAGGTCTGTGGCTGTGGCTGTTCATGTCCCGCCGAAGGGGGGAAGGGTGCTGGGGGCTGTGCGAGCGGTGACGTCGGCGACGGTGTCGGAGACTCCTTCGAGCCCTAAGGTAAGGGGCATAATGAAGCCCCGCAAAATCTCTCCGGAGATGCAAGCCATCTGCGGCGTCTCCGAGATTTCTCGAACCCAGGCTCTCAAGCAGATTTGGGCCTACATCAAGGAAAACAATCTTCAGGATCCTGAAAACAAGAAGATCATAATTTGTGATGAAAAGCTGAAGAAGATATTTGCTGAGAGAGATCAAGTTGGCATGCTTGAGATTGCTGGATTAATTAGCCCACACTTTCTTAAATGA 426 0.5282 MAASLGVFSGMSFVAAEAPSGSLFRSVAVAVHVPPKGGRVLGAVRAVTSATVSETPSSPKVRGIMKPRKISPEMQAICGVSEISRTQALKQIWAYIKENNLQDPENKKIIICDEKLKKIFAERDQVGMLEIAGLISPHFLK* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g1334 141 Pfam SWIB/MDM2 domain 66 139 IPR003121 -
Ahy15g1334 141 CDD SWIB-MDM2_like 68 139 - -
Ahy15g1334 141 PANTHER EXPRESSED PROTEIN-RELATED 12 140 - -
Ahy15g1334 141 SUPERFAMILY SWIB/MDM2 domain 58 141 IPR036885 -
Ahy15g1334 141 SMART swib_2 64 141 IPR019835 -
Ahy15g1334 141 Gene3D SWIB/MDM2 domain 58 141 IPR036885 -
Ahy15g1334 141 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 12 140 - -
Ahy15g1334 141 ProSiteProfiles SWIB/MDM2 domain profile. 63 141 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g1334 Ahy-Chr15 21991610 21993371 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Ahy15g1334 SWIB 3.10E-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g1334 - - lja:Lj1g3v0050930.1 164.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g1334 15 21991610 21993371 Ahy15g1334 15 21991610 21993371 ECH