LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy15g0785	ATGTGGCGGTGCGTCGCTCGTCGACTTCGTGTTCCTCCACCCTCCGACGGATCCACACCTAATCACTCTCTTAGATCTCACTTTTCTAGATTCTTCTCTAGCGGAGAGAACTCGTCGTACACGGTGGTGGATCATAAGTATGATGCTGTTGTGGTAGGTGCTGGTGGCGCTGGGTTGAGAGCTGCTATTGGACTTTCCGAGCATGGATTCAACACTGCTTGCATCACCAAGCTCTTCCCAACTCGTTCTCACACTGTTGCAGCTCAGGGCGGTATAAATGCTGCATTGGGAAATATGACTGAAGATGACTGGAGGTGGCACATGTATGACACTGTCAAGGGAAGTGATTGGCTAGGAGATCAAGATGCCATCCAGTATATGTGTAGGGAAGCACCAAAAGCAGTCATTGAGCTTGAGAATTATGGATTACCATTTTCCCGTACAGAGGATGGAAAAATATATCAGCGTGCATTTGGTGGTCAAAGCTTGAACTTTGGAAAGGGTGGTCAAGCCTACCGATGTGCATGTGCCGCTGATCGAACTGGACATGCTTTGTTGCACACTCTTTATGGCCAGGCTATGAGACATAATACACAGTTTTTTGTGGAGTATTTTGCATTGGACCTTATAATGAATAGTGACGGAAGTTGCCAAGGAGTAATTGCCTTGAATTTGGAGGACGGAACATTACATCGGTTTCAAGCTGCTTCAACAATTTTGGCAACAGGGGGTTATGGTAGAGCATATTTTTCCGCAACCTCTGCACATACATGTACTGGAGATGGTAATGCCATGGTTGCACGTGCTGGACTCCCTCTCGAGGATTTGGAGTTTGTGCAGTTTCACCCAACAGGTATATATGGAGCAGGTTGCCTTATCACAGAAGGTTCCCGGGGTGAAGGTGGAATTCTAAGAAATAGTGAAGGTGAGCGATTTATGGAACGATATGCTCCCACTGCAAAGGATCTTGCATCAAGAGATGTAGTTTCAAGATCAATGACTATGGAGATTCGGGAAGGTCGTGGTGTAGGACCCTTGAAAGATCACATCTATCTCCACTTGAATCACTTACCCCCAGATGTGCTCAAGGAGAGACTTCCTGGAATATCGGAAACAGCTGCTATTTTTGCTGGTGTGGATGTTACAAAGGAACCCATTCCTGTTTTGCCCACTGTGCATTATAACATGGGTGGTATACCTACAAACTATCATGGAGAGGTGGTTACCATTAAAGGTGACAACCCAGATGCAGTAGTTCCTGGATTGATGGCTGCTGGAGAAGCAGCTTGTGCGTCGGTGCATGGAGCCAATAGGCTTGGTGCCAATTCGCTTCTGGATATTGTAGTTTTTGGCAGAGCTTGTGCAAATAGGGTTGCAGAAATCCATAGGCCAGGAGAAAAACAAAAACCTTTAGAGAGTGACGCTGGTCAGAAAACAATTGCCTGGCTGGACAAGTTGAGAAATTCAAATGGTTCATTGCCAACAGCGAAAATTAGGTTAAATATGCAACGGATAATGCAAAATAATGCTGCTGTATTCCGTACACAAGACACATTAGCAGAAGGTTGCCAATTAATTGATAAAGCGTGGGAGAGCTTCCATGATGTCAAGTTAGAGGACCGGAGTTTAATTTGGAACTCCGACCTGATTGAGACTATTGAGTTGGAAAACCTTTTGATTAATGCCTGCATCACAATGCACTCAGCTGAAGCCAGGAAAGAAAGCAGAGGAGCTCATGCCCGTGAGGATTTCACGAAAAGAGATGATGAGAACTGGATGAAACACACTTTGGGGTATTGGGAGAAGGAGAAGGTCCGGTTGGACTACAGGCCGGTGCACATGAATACACTAGATGATGAGGTTGAGTCATTCCCTCCCAAAGCTCGTGTGTATTAA	1896	0.4568	MWRCVARRLRVPPPSDGSTPNHSLRSHFSRFFSSGENSSYTVVDHKYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLIMNSDGSCQGVIALNLEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTIKGDNPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIHRPGEKQKPLESDAGQKTIAWLDKLRNSNGSLPTAKIRLNMQRIMQNNAAVFRTQDTLAEGCQLIDKAWESFHDVKLEDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWEKEKVRLDYRPVHMNTLDDEVESFPPKARVY*	632

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy15g0785	631	Pfam	FAD binding domain	48	444	IPR003953	-
	Ahy15g0785	631	SUPERFAMILY	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	276	394	IPR027477	-
	Ahy15g0785	631	Gene3D	-	471	581	-	-
	Ahy15g0785	631	Gene3D	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	286	389	IPR027477	-
	Ahy15g0785	631	PANTHER	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	3	631	IPR030664	-
	Ahy15g0785	631	PANTHER	SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL	3	631	-	-
	Ahy15g0785	631	TIGRFAM	sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit	48	631	IPR014006	GO:0016627\|GO:0022900\|GO:0050660
	Ahy15g0785	631	SUPERFAMILY	FAD/NAD(P)-binding domain	39	467	IPR036188	-
	Ahy15g0785	631	PIRSF	SDHA_APRA_LASPO	37	621	-	-
	Ahy15g0785	631	ProSitePatterns	Fumarate reductase / succinate dehydrogenase FAD-binding site.	82	91	IPR003952	GO:0016491
	Ahy15g0785	631	Gene3D	succinate dehydrogenase protein domain	582	631	-	-
	Ahy15g0785	631	TIGRFAM	sdhA_forward: succinate dehydrogenase, flavoprotein subunit	45	631	IPR011281	GO:0006099\|GO:0016627\|GO:0050660
	Ahy15g0785	631	Gene3D	-	48	455	IPR036188	-
	Ahy15g0785	631	SUPERFAMILY	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain	490	631	IPR037099	GO:0016491
	Ahy15g0785	631	Pfam	Fumarate reductase flavoprotein C-term	500	631	IPR015939	GO:0016491

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy15g0785	Ahy-Chr15	10848659	10854253	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy15g0785	K00234		-	gmx:100802169	1186.02

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy15g0785	15	10848659	10854253	Ahy15g0785	15	10848659	10854253	ECH