Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4066 ATGCATTTGGGTCTGTTACCATCTGATATGTATCAAAGTGTTGGGGCAAGGCGCCTCCTATACCGCTCTCAGATAACACATTACGTGAAAGCAGGTCTCATTGACAATGCCATCAAGGTGTTCGACGAAATGACCCAATCAAACTGCCGCCTCTTCAGCCTTGACTACAACCGCTTCATCGGTGTCCTCCTCCGCCAGTCCCGCTTCGACCTTGCTGAGCACTACTACTTCCACCACGTCATCCCCCAGGGCTTCTCCCTCTCCCCATTCACCTATTCCCGCTTCATTTCTGCCCTCTGCAGCGTCAGGAATTTCACCCTCATCAACAAGCTCCTCCGTGACATGGACGCACTCGGTTGCATCCCTGACATATGGGCCTTCAATATCTACTTGGACCTCTTGTGGCGTGATCATCGGTTGGATGATGCTCTGGAACTTTTCCATTGCTTGTCCCGCAAGGGAAGAGAGCCTGATATTGTTAGTTACACTATCCTCATTGATGCACTGTGCAAGTCTCGCCGGTTCAATGAGGCTGCTGGGTTTTGGCGAGGTTTGATTGATAAGGGGCTGAAACCTGATGCTAAGGCTTGTGGTGCTCTTGTGACTGGTTTGTGTTCTGGTGGTCATGTTGATTTGGCTTATGAGCTTGTTGTTGAGGTGATCAAGGGTGGTGTGGAGGTTAATAGTTTGGTTTATAATGCTTTGATTGGTGGGTATTGTAGGGTAGGGAAGATTGATAAGGCGCTCGCGATTAAGGCGTTTATGAGCAAGAATGGGTGTCTGCCGGACTTGGTGACTTATAATACCTTGTTGAATTATTGTTGTAATGAGCTTATGTTGGATGAGGCAGTTAGGTTAGTACAGTCAATGGAGACGAGTGGTGTGGAGCCAGATTTGTATAGTTATAATGAGCTGCTAAAGGTTTTTTGTAAGGCTAACCAAATGGAAAGAGCTTATTGGATTATGGTAAATAGGATGCAGGTTAAAGGGTTGTGTGATGTTGTTTCTTACAATACCATTATCGATGCGTTTTGTAAGGCACACCAGACTGGGAGGGCTTATAACTTGTTTAAGGAAATGTATAGGAAGGGGATTCAACCCGATGTAGTGACTTTCACAATCATTATAAAAGCATTTCTGAGAGAAGGTAGTTCTACTGTGGCCAAGAAGCATCTTGATCAAATGACCAAGATGGATATTGCTCCTGATCAAGTATTCTATACGACAATAGTGGATCACATGTGCAAGACTGGAAAAATTGATACGGCTCATAGCATTTTCCGTGACATGGTGGAGAATGGTATAACTCCAGATGTTGTCTCTTACAATGCCCTCATAAATGGGTTTTGCAAGGCTTCTCGAGTTACAGATGCTATGCATCTATATGATGAAATGCAAGCGAAAGAATTCCATCCTGATGCGGTAACTTTCAAGTTGATAGTTGGAGGGCTTATAAGGGAAAACAAGCTTTCAGATGCCTGTAAGGTTTGGGACCAGATGATGGAAAAGGGCTTTACACTCGACAGTCATGTTTCTCAGACCCTGATCAATGCCCTTCAATTGAGTAATGCCACATAA 1578 0.4474 MHLGLLPSDMYQSVGARRLLYRSQITHYVKAGLIDNAIKVFDEMTQSNCRLFSLDYNRFIGVLLRQSRFDLAEHYYFHHVIPQGFSLSPFTYSRFISALCSVRNFTLINKLLRDMDALGCIPDIWAFNIYLDLLWRDHRLDDALELFHCLSRKGREPDIVSYTILIDALCKSRRFNEAAGFWRGLIDKGLKPDAKACGALVTGLCSGGHVDLAYELVVEVIKGGVEVNSLVYNALIGGYCRVGKIDKALAIKAFMSKNGCLPDLVTYNTLLNYCCNELMLDEAVRLVQSMETSGVEPDLYSYNELLKVFCKANQMERAYWIMVNRMQVKGLCDVVSYNTIIDAFCKAHQTGRAYNLFKEMYRKGIQPDVVTFTIIIKAFLREGSSTVAKKHLDQMTKMDIAPDQVFYTTIVDHMCKTGKIDTAHSIFRDMVENGITPDVVSYNALINGFCKASRVTDAMHLYDEMQAKEFHPDAVTFKLIVGGLIRENKLSDACKVWDQMMEKGFTLDSHVSQTLINALQLSNAT* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4066 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Ahy13g4066 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Ahy13g4066 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Ahy13g4066 525 Gene3D Tetratricopeptide repeat domain 74 220 IPR011990 GO:0005515
Ahy13g4066 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Ahy13g4066 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 123 157 IPR002885 -
Ahy13g4066 525 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 11 524 - -
Ahy13g4066 525 Gene3D Tetratricopeptide repeat domain 221 326 IPR011990 GO:0005515
Ahy13g4066 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 329 IPR002885 -
Ahy13g4066 525 Pfam PPR repeat family 333 380 IPR002885 -
Ahy13g4066 525 Pfam PPR repeat family 402 451 IPR002885 -
Ahy13g4066 525 Pfam PPR repeat family 262 311 IPR002885 -
Ahy13g4066 525 Pfam PPR repeat family 122 171 IPR002885 -
Ahy13g4066 525 Gene3D Tetratricopeptide repeat domain 418 524 IPR011990 GO:0005515
Ahy13g4066 525 Gene3D Tetratricopeptide repeat domain 327 417 IPR011990 GO:0005515
Ahy13g4066 525 Pfam PPR repeat 224 250 IPR002885 -
Ahy13g4066 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 17 51 IPR002885 -
Ahy13g4066 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Ahy13g4066 525 Pfam PPR repeat 25 49 IPR002885 -
Ahy13g4066 525 Pfam PPR repeat 475 505 IPR002885 -
Ahy13g4066 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Ahy13g4066 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Ahy13g4066 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Ahy13g4066 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 122 IPR002885 -
Ahy13g4066 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Ahy13g4066 525 TIGRFAM PPR: pentatricopeptide repeat domain 370 403 IPR002885 -
Ahy13g4066 525 TIGRFAM PPR: pentatricopeptide repeat domain 406 439 IPR002885 -
Ahy13g4066 525 TIGRFAM PPR: pentatricopeptide repeat domain 160 194 IPR002885 -
Ahy13g4066 525 TIGRFAM PPR: pentatricopeptide repeat domain 25 50 IPR002885 -
Ahy13g4066 525 TIGRFAM PPR: pentatricopeptide repeat domain 265 298 IPR002885 -
Ahy13g4066 525 TIGRFAM PPR: pentatricopeptide repeat domain 440 474 IPR002885 -
Ahy13g4066 525 TIGRFAM PPR: pentatricopeptide repeat domain 335 369 IPR002885 -
Ahy13g4066 525 TIGRFAM PPR: pentatricopeptide repeat domain 475 508 IPR002885 -
Ahy13g4066 525 TIGRFAM PPR: pentatricopeptide repeat domain 231 263 IPR002885 -
Ahy13g4066 525 TIGRFAM PPR: pentatricopeptide repeat domain 90 124 IPR002885 -
Ahy13g4066 525 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 11 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4066 Ahy-Chr13 140085853 140088972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4066 89 523 Glycosyltransferase AT1G05670 27.002 1.08e-54 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4066 - - aprc:113872581 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4066 13 140085853 140088972 Ahy13g4066 13 140085853 140088972 ECH
Ahy13g4066 13 140085853 140088972 Ahy3g3789 3 137270320 137275585 hybridization