Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3966 ATGTCCCTCCACAGCGAATCGACTGACCACTGGAGGGTGGCATCCCCGGCATTGAGGGGCGCCGAAAACGCCGTCCCCGGGTGCGCATACGGTGGAGCGGTTTCGAGCCAGAGACTGAGGGTGAACCCGATCAGAGACCACGTATCGGAATCGTACGATGAATTGGAGTTGGATTTCAGCCCTTCGATTTTCAGCTCTCTGGAGAAGCACCTTCCGATGAACATGCTCAATGCAACTCGCGGGGACAAGCTCAAGTACCTCAGAACCATTCTCCTCGACTATCTTCCCCCTGCCGCTCGCATTAGAGACCAAAAGTATAGAGAATACACACAGATGATACTATCAAATTATAAGCCTCTCAATAAAGAGTTGTACGCTATGAATCCTACAGCATTCTTTGTCCCAGCATTCCTGAAAGCAATTAGTGATAATAATGAAGACAGTTTTAGAAGTATAGTTTCTGAGCCCTTCCCTGGCATTTTTACATTTGAAATGCTTCAGCCACACTTTTGTGAATTGCTGTTATCTGAGGTCGAAAGCTTTGAGAGGTGGGCTTTCAAAACAAAATTTCAGATTATACGTCCCAATACAATGAATAAGTATGTGTTTTTTGCAGAACTTGGTGGATCAACCCTGGATGCTCATCACGGGTTTATTGTGGAATATGGCAAAGATAGAGATATTGACTTAGGTTTCCATGTGGATGATGCAGACATAACCTTGAATGTTTGCCTGGGCAAGGAATTTTGTGGAGGGGAATTGTTTTTTCGGGGCATGCGTTGTGATAAACATATAAATACAGAAAGTATTGCAGAGGAGATCTTTGATTATTCGCATGTCCCTGGACAAGCTGTCCTTCATCATGGTCGTCATCGCCATGGTGCTAGAGCCACTACATGGGGTCATCGGGTTAACCTAGTTCTTTGGTGCCGAAGTTCTGCTTTTAGAGAGCTGCAAAGGTATAAATCAGATTTCTCTAGCTGGTGTAATGTGTGCACTCGTCAGAAGAAAGAACGGCAGCGCAAAACAATAGATATTACCAGCTTGGATTTGTTCAAATGGAAAGGCGAAGCAACTGCATGA 1083 0.4497 MSLHSESTDHWRVASPALRGAENAVPGCAYGGAVSSQRLRVNPIRDHVSESYDELELDFSPSIFSSLEKHLPMNMLNATRGDKLKYLRTILLDYLPPAARIRDQKYREYTQMILSNYKPLNKELYAMNPTAFFVPAFLKAISDNNEDSFRSIVSEPFPGIFTFEMLQPHFCELLLSEVESFERWAFKTKFQIIRPNTMNKYVFFAELGGSTLDAHHGFIVEYGKDRDIDLGFHVDDADITLNVCLGKEFCGGELFFRGMRCDKHINTESIAEEIFDYSHVPGQAVLHHGRHRHGARATTWGHRVNLVLWCRSSAFRELQRYKSDFSSWCNVCTRQKKERQRKTIDITSLDLFKWKGEATA* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3966 360 Gene3D q2cbj1_9rhob like domain 166 312 - -
Ahy13g3966 360 SMART p4hc 158 311 IPR006620 GO:0005506|GO:0016705|GO:0031418
Ahy13g3966 360 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 213 312 IPR005123 -
Ahy13g3966 360 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 34 201 - -
Ahy13g3966 360 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 34 201 - -
Ahy13g3966 360 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 202 358 - -
Ahy13g3966 360 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 202 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3966 Ahy-Chr13 139047512 139051302 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3966 - - twl:120016595 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3966 13 139047512 139051302 Ahy3g3692 3 136224680 136228560 hybridization
Ahy13g3966 13 139047512 139051302 Ahy15g2697 15 143330814 143334401 PCT
Ahy13g3966 13 139047512 139051302 Ahy5g2537 5 100951159 100955474 PCT
Ahy15g2697 15 143330814 143334401 Ahy13g3966 13 139047512 139051302 PCT
Ahy5g2537 5 100951159 100955474 Ahy13g3966 13 139047512 139051302 PCT