Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3910 ATGGATCAAGAGTCTTCTCCTCACGAGGCCATGTTTCTGGTGTTAGGTTACCTTCCAGTCTACGAGCTTTTATTGATGTCTCAAGTTTGCAGGTCACTGAGAGATGCACTGAACAACGATGTGCTGCCATGGCTAAACATCCTTGTTCAAAGGCCTCTCAGTTCTCGACTCTCTGATCACACTCTCATCAACATCACCTCCAAGGCCAATGGTGGCCTCAAAACACTCTCTCTTATCAACTGCATCCACATCACGAACCACGGCCTTCAAACCCTCGTTCGTCAAAACCCTCACATAACAAAGCTGCACATACCAGGATGCAGCAGCATAACCCCTGAAGGAGTCGTAGCAGCCGTGACAACACTCTGCCATGGAAGCAATTGCTTAAGAACCTTGAGAATTAACGGCATCTATAACCTAAACAGGGAGCATCTACGCACGCTGGCTTCTTGCCTTAACAACAACCTCCAATTAGAGCAGCAGCCTCTCTTCTATCACGAACGCCACAGAGAAAGGGAGAGGATTATTGATTTGGAGGCATGTCCCAAGTGCTATGAGGCGAGGGAGGTTTATGACTGCCCGAAAAGAGAGTGCGAGTGTAGAGCATGCAGTTTTTGTATTCCAAGATGTGAAAACTGTGGTGGCTGCATTGCATCAGAACAAGTGGAAGAGGCTGCTTGTTCAGATATCTTGTGCCTTAATTGCTGGTTACATGAGCATCCCAAATGCAGTTTCTGTAACAAGCCATACTGTAGGCAACACACTTCATGGTGGCCCAATTCTTCTGACTCTACATTCGTTTGTAGAGTTTGCCAAGAAAATTCAAGTGGATACACCTACATGGATGACTTTATGTAA 858 0.4627 MDQESSPHEAMFLVLGYLPVYELLLMSQVCRSLRDALNNDVLPWLNILVQRPLSSRLSDHTLINITSKANGGLKTLSLINCIHITNHGLQTLVRQNPHITKLHIPGCSSITPEGVVAAVTTLCHGSNCLRTLRINGIYNLNREHLRTLASCLNNNLQLEQQPLFYHERHRERERIIDLEACPKCYEAREVYDCPKRECECRACSFCIPRCENCGGCIASEQVEEAACSDILCLNCWLHEHPKCSFCNKPYCRQHTSWWPNSSDSTFVCRVCQENSSGYTYMDDFM* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3910 285 SMART LRR_CC_2 70 95 IPR006553 -
Ahy13g3910 285 SMART LRR_CC_2 96 121 IPR006553 -
Ahy13g3910 285 ProSiteProfiles F-box domain profile. 1 47 IPR001810 GO:0005515
Ahy13g3910 285 SUPERFAMILY RNI-like 60 159 - -
Ahy13g3910 285 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 4 277 - -
Ahy13g3910 285 SUPERFAMILY F-box domain 7 57 IPR036047 GO:0005515
Ahy13g3910 285 Pfam F-box domain 7 42 IPR001810 GO:0005515
Ahy13g3910 285 Gene3D Ribonuclease Inhibitor 52 162 IPR032675 -
Ahy13g3910 285 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 200 211 IPR017900 -
Ahy13g3910 285 PANTHER F-BOX PROTEIN SKIP28 4 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3910 Ahy-Chr13 138557519 138558702 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3910 - - lang:109340729 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3910 13 138557519 138558702 Ahy13g3910 13 138557519 138558702 ECH
Ahy13g3910 13 138557519 138558702 Ahy3g3639 3 135746268 135747426 hybridization