LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy13g3789	ATGAGCATGTCCACAACCCTCACTTTGGAACCACTCTTCGGCTTCAACACACGCAGAGGCATCCCCATTTCCATTATTCACCGCTCTTCCAAGCCCAAGACATTGTTGTTCCCTCCACCTTCTTCTCTCTCTTCTTCCACCATCATCAAGAGTTCCTCTTGGTCTTGGTCGGTATCCCACAGGCTCCACGCTCCAAAGTTTGAAGCTTTTGCCGCGAACACTGATACCCTCGAGCCCCTTCAATCATCTGATGTATTATTCAGCAAGATTTTCCCCATCAACAGAACTGAATTGTTGGAGGGACAAATCTTTGTTAGATTGGATCAGGGCAAAGACTTAAGAAATTGGGAGCTAACTGTGGGTTGCAATCTACCTGGGAAATGGGTTCTTCACTGGGGAGTTTCCCGCTTAGATGATGTTGGAAGTGAATGGGATCAGCCTCCTCGTGATATGATACCCCCAGGATCTGTTCCTATAAAGGACTATGCAATTGAGACACCTTTGAAGAAATCAACGTCATCTTCTGAAGGAGATAATTTTCATGAGGTCAAGATTGATCTTACATCCAACAGTGAAATCTCCGCAATTAATTTTGTTCTCAAGGATGAGGAAACTGGTGCTTGGTTTCAACACAAAGGAAGAGATTTCAAGGTTCCTCTAGTCAGCTACCTGAAGGAGGATGCTAATATAATTGGACCTAAAAAGGGCTTTAGTTTTTGGCCAGGGGCCTTGGGGCAGATATCTAACATTCTTCTCAAGTCAGAGGCAGTGCATAGCAACGATCAAGATAACGGCAAGCAATCCAGTGAGCCAAGAAAAGGAAATAGTCAACTAGAAGGCTTCTATGTAGAGCTGCCAATTACCAAAGAAGTTACTGTCGGCAACTCTATCAGTGTCTCCGTTAAGAAATGTGCTGAGACAGCTAACAATCTTTTATATTTAGAAACAGATATACCTGGAGAGGTTCTCCTTCATTGGGGAGTTTGCAAAGATGATTTGAGAAGGTGGGAAGTTCCACCTGCTCCTCATCCAGCAGAAACAGTAGCATTTAAGAACAGAGCTTTGAGAACTAAATTACAGTCAAGGGACAGCGGGAAGGGGAATTCAGTAGAAATTCCTGTGGGAGAAGAATTTTCAGGATTTCTTTTTGTTGTTAAGCTAGACGACAATACTTGGTTGAATGACAAGGGAAATGACTTTCATATCCCTCTGTCAAGTTCTAGTAACTCACTTACTAGCAAAAAAAAGGATCAATCAGAAGCTGTCCAGAGGGAAGTGACAAGAGTGGAAAGTCAGGAGGAACCTACCTCTACATTTACCGATGGAATAATCAGTGAAATAAGGCATTTAGTGACAGACATTTCCTCTGAGAAGACTCGAAAAACAAAATCCAAAGAAGCACAAGAAAGCATTCTTCAAGAAATTGAAAGACTTGCTGCTGAAGCTTATAGTATTTTTAGGACCAATGTTCCAACTTTCTCAGAGGAAACCATTGCGGAACCTGAGGCGGTGGCTTCTGTAGAATCAGAGACATTGGTGTCACCTGAGGCACCAAAAATATCCTCAGGGACAGGCACTGGTTATGAAATATTATGCCAAGGGTTTAACTGGGAATCTCATAAATCTGGAAGATGGTACATGGAGCTGAAAGAGAAAGCTGCAGAACTATCATCATTTGGTTTTACTGTAGTTTGGTTACCACCACCTACGGAGTCTGTGTCCCCTGAAGGATACATGCCAAAGGATTTATATAATTTAAATTCTAGATATGGAAACATTGATGAACTGAAGGATGTGGTGAAAAGCTTTCACAGAGCTGGAATCAAAGTACTTGGAGATGTCGTTTTGAATCATCGATGTGCCCACTTTAAGAACCAGAATGGTATTTGGAACATATTTGGAGGTCGCCTCAACTGGGACGATCGAGCAATTGTTGCTGATGATCCACATTTTCAGGGTAGAGGCAACAAAAGTAGTGGAGATAATTTCCATGCTGCTCCGAACATTGATCATTCACAGGAATTTGTGAGAAAGGATATTAAAGAATGGTTACTTTGGTTGAGGAAAGAAATTGGCTATGATGGGTGGAGGCTTGACTTTGTGAGAGGATTTTGGGGTGGTTATGTAAAGGATTACCTCGAAGCAAGTGAACCTTACTTTGCTGTTGGAGAGTACTGGGATTCCCTCAGTTATACATATGGCGAGATGGATCATAATCAAGACGCGCATAGGCAGCGGATCATTGACTGGATCAATGCTACCAATGGTACTGCGGGGGCATTCGATGTTACGACCAAAGGGATCCTTCACTCTGCATTGGATAAATGTGAATATTGGCGATTGTCAGATCAGAAGGGAAAACCCCCTGGAGTTCTTGGATGGTGGCCGTCTCGTGCTGTTACTTTTATAGAAAATCATGATACTGGCTCTACCCAGGGTCATTGGAGATTTCCAAGCGGAAAAGAGATGCAAGGATATGCATACATCCTTACTCACCCAGGAACTCCATCGGTGTTCTTTGATCACATATTCTCTCATTACAAGACTGAAATATCCATTCTTTTGTCTGTCCGGCAACGGAACAAGCTACACTGCCGGAGTATAGTAAAAATATGCAAGGCAGAAAGGGATGTTTATGCTGCAATCATAGATGATAAAGTTGCTATGAAGATTGGACCTGGTCATTTTGAGCCACCAAGTGGATCCCAAAAATGGTCCTCAGCTCTGGAAGGAAGAGATTATAAGATTTGGGAGGCATCATAA	2763	0.4267	MSMSTTLTLEPLFGFNTRRGIPISIIHRSSKPKTLLFPPPSSLSSSTIIKSSSWSWSVSHRLHAPKFEAFAANTDTLEPLQSSDVLFSKIFPINRTELLEGQIFVRLDQGKDLRNWELTVGCNLPGKWVLHWGVSRLDDVGSEWDQPPRDMIPPGSVPIKDYAIETPLKKSTSSSEGDNFHEVKIDLTSNSEISAINFVLKDEETGAWFQHKGRDFKVPLVSYLKEDANIIGPKKGFSFWPGALGQISNILLKSEAVHSNDQDNGKQSSEPRKGNSQLEGFYVELPITKEVTVGNSISVSVKKCAETANNLLYLETDIPGEVLLHWGVCKDDLRRWEVPPAPHPAETVAFKNRALRTKLQSRDSGKGNSVEIPVGEEFSGFLFVVKLDDNTWLNDKGNDFHIPLSSSSNSLTSKKKDQSEAVQREVTRVESQEEPTSTFTDGIISEIRHLVTDISSEKTRKTKSKEAQESILQEIERLAAEAYSIFRTNVPTFSEETIAEPEAVASVESETLVSPEAPKISSGTGTGYEILCQGFNWESHKSGRWYMELKEKAAELSSFGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGNIDELKDVVKSFHRAGIKVLGDVVLNHRCAHFKNQNGIWNIFGGRLNWDDRAIVADDPHFQGRGNKSSGDNFHAAPNIDHSQEFVRKDIKEWLLWLRKEIGYDGWRLDFVRGFWGGYVKDYLEASEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINATNGTAGAFDVTTKGILHSALDKCEYWRLSDQKGKPPGVLGWWPSRAVTFIENHDTGSTQGHWRFPSGKEMQGYAYILTHPGTPSVFFDHIFSHYKTEISILLSVRQRNKLHCRSIVKICKAERDVYAAIIDDKVAMKIGPGHFEPPSGSQKWSSALEGRDYKIWEAS*	921

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy13g3789	920	SMART	alpha-amyl_c2	859	919	IPR012850	GO:0004556\|GO:0005509\|GO:0005975
	Ahy13g3789	920	MobiDBLite	consensus disorder prediction	404	441	-	-
	Ahy13g3789	920	SUPERFAMILY	(Trans)glycosidases	528	846	IPR017853	-
	Ahy13g3789	920	PANTHER	ALPHA-AMYLASE 3, CHLOROPLASTIC	88	920	-	-
	Ahy13g3789	920	SMART	aamy	529	864	IPR006047	GO:0005975
	Ahy13g3789	920	Pfam	Alpha amylase, catalytic domain	556	811	IPR006047	GO:0005975
	Ahy13g3789	920	PRINTS	Alpha-amylase signature	607	618	IPR006046	GO:0004556\|GO:0005975\|GO:0043169
	Ahy13g3789	920	PRINTS	Alpha-amylase signature	693	704	IPR006046	GO:0004556\|GO:0005975\|GO:0043169
	Ahy13g3789	920	PRINTS	Alpha-amylase signature	797	809	IPR006046	GO:0004556\|GO:0005975\|GO:0043169
	Ahy13g3789	920	MobiDBLite	consensus disorder prediction	417	431	-	-
	Ahy13g3789	920	Pfam	Alpha-amylase C-terminal beta-sheet domain	860	918	IPR012850	GO:0004556\|GO:0005509\|GO:0005975
	Ahy13g3789	920	PANTHER	ALPHA-AMYLASE	88	920	-	-
	Ahy13g3789	920	SUPERFAMILY	Glycosyl hydrolase domain	863	918	-	-
	Ahy13g3789	920	CDD	AmyAc_arch_bac_plant_AmyA	530	869	-	-
	Ahy13g3789	920	Gene3D	-	863	919	IPR013780	-
	Ahy13g3789	920	Gene3D	Glycosidases	529	862	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy13g3789	Ahy-Chr13	137081759	137089822	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy13g3789	18	920	Glycoside Hydrolase	AT1G69830	65.487	0.0	1216

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy13g3789	K01176		-	gmx:100788193	1534.62

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy13g3789	13	137081759	137089822	Ahy13g3789	13	137081759	137089822	ECH