Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3708 ATGGCTCGGGTCTATATTGGGAATCTGGACCCTCGTGTGTCTGAGAGGGATCTCGAAGATGAATTTCGTTTATTTGGTGTTCTTCGGAGTGTCTGGGTTGCTCGTAGACCGCCCGGATATGCATTCATCGAGTTTGATGATAGGAGGGATGCACTTGACGCAATTCATGCCTTGGATGGGAAAAATGGGTGGCGTGTAGAGCTTTCTCATAATTCTAAGGGAGGAGGCCGTGGTGGGCGTGGGCGTGGAAGTGATGACCTTAAATGTTATGAATGTGGTGAACCTGGACATTTTGCAAGAGAGTGTCGCTTGCGCGTTGGTTCACGTGGCCTGGGTAGTGGAAGGAGGCGAAGTCCAAGTCCTTATTATAGGCGTCGCAGAAGTCCAAGTTATGGGAGTGTTAGTCCTCGTGGGAGAAGATCTCCAAAGAGACGTAGCATATCACCTCCTTATCGGGGTCGCAGCTACAGCAGGTCCCCTCCATACCGACATGCCCGCCGTGATTCACCTTATGCCAATGGAGATTGA 528 0.5095 MARVYIGNLDPRVSERDLEDEFRLFGVLRSVWVARRPPGYAFIEFDDRRDALDAIHALDGKNGWRVELSHNSKGGGRGGRGRGSDDLKCYECGEPGHFARECRLRVGSRGLGSGRRRSPSPYYRRRRSPSYGSVSPRGRRSPKRRSISPPYRGRSYSRSPPYRHARRDSPYANGD* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3708 175 MobiDBLite consensus disorder prediction 161 175 - -
Ahy13g3708 175 Gene3D - 75 146 - -
Ahy13g3708 175 MobiDBLite consensus disorder prediction 109 175 - -
Ahy13g3708 175 SMART rrm1_1 3 69 IPR000504 GO:0003723
Ahy13g3708 175 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 173 - -
Ahy13g3708 175 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Ahy13g3708 175 Pfam Zinc knuckle 88 103 IPR001878 GO:0003676|GO:0008270
Ahy13g3708 175 MobiDBLite consensus disorder prediction 66 86 - -
Ahy13g3708 175 SUPERFAMILY RNA-binding domain, RBD 3 81 IPR035979 GO:0003676
Ahy13g3708 175 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Ahy13g3708 175 Gene3D - 2 69 IPR012677 -
Ahy13g3708 175 SUPERFAMILY Retrovirus zinc finger-like domains 69 106 IPR036875 GO:0003676|GO:0008270
Ahy13g3708 175 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ21 2 173 - -
Ahy13g3708 175 CDD RRM_SRSF3_like 3 71 - -
Ahy13g3708 175 SMART c2hcfinal6 88 104 IPR001878 GO:0003676|GO:0008270
Ahy13g3708 175 ProSiteProfiles Zinc finger CCHC-type profile. 88 103 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3708 Ahy-Chr13 135842931 135846076 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3708 K12896 - rcu:8262005 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3708 13 135842931 135846076 Ahy13g3708 13 135842931 135846076 ECH