Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3676 ATGGACAAATTCTTCTTGGTTTCCTTATTGTGTTTGCTGATAGCGGCTCATGGAGTCACAGGAACCCTGACATGTGACAACATTGCCATGCTTGATGAACTTGCAAATATGGATACAGAAGAAAATGAGATAGAGCTCTCTGACATTCCTTCATGGACAAGTGAGCGTGGTGGAAAGGTTCTTGTGAATGTTGATAGCTTTGGTGCTGCTGGAGATGGAGAATCTGATGATACTGAGGCTTTCCGAAAAGCATGGAATGTTTCTTGCTCTACACCAAATTCTGTGTTCTTAGTTCCCCAAGGACGCCGCTACCTTGTCAATGCAACAAAATTCATAGGGCCTTGTAAAGGCACTCTAATCATCCAGATTGATGGAACAATAGTAGCACCAGATGAGCCTAAGAACTGGGATTCAAAATTAGCACGCGTTTGGCTTGATTTTTCAAAATTGGAGAAAGCTGTTTTCCAAGGTGCTGGAGTTATTGATGGCTCAGGCAAAAAATGGTGGGAAGCATCTTGCAAGAAGAACAAGTCTAATCCTTGCAAAGGTGCACCAACAGCATTGACCATTGATTCAAGCTCAGGTATAAAGGTGAAAGGACTAACTATACAGCATAGCCAACAGATTCATTTTACCATATCAAGGTGTAATTCTGTTAGGATTTATGGTGTCAAAGTGTCATCACCAGATGACAGCCCAAACACCGACGGAATTCATATTAGTGAATCAACTAATGTCATAATCCAAGACAGCAAAATTGGAGCAGGGGATGATTGCATATCAATTGTGAATGCCAGTTCCAATATCAAAATGAAAAGAATTTTTTGTGGACCAGGACATGGAATTAGCATTGGGAGCCTTGGGAAAGACAATTCAACTGGCATAGTGACAAAAGTGATTTTAGATACAGCAGTTATTAAGGATACTACAAATGGTGTCAGGATTAAGACTTGGCAGGGGGGTTCTGGGTATGTTCGTGGAGTACGCTTTCAGAATGTGAAGATGGAAAATGCCTCAAACCCCATTATTATTGATCAATTTTACTGTGATTCACCAACTACTTGTCAAAACCAGACATCAGCCGTGGAGATAAGCGAGATCATGTATCAGAACATTAGTGGGACAACAAGGAGTGCTAAGGCCATTCAATTTGCATGCAGTGACACAGTTCCATGCAGCAGCTTGGTTCTTAGCAATGTGGACTTGGAGAAGCAAGACGGCACTGTCGAAACTTACTGTCACTCCGCTCAAGGCTTCGGCTATGGTGTTGTGCACCCTTCTGCCGATTGCCTCAATTCCAGCGACAACACTTCGGAAGTTATTACAGAACCAATCACAGTCGAAGAGGAGGAGGATACTCATCACACTGAACTATAA 1377 0.4234 MDKFFLVSLLCLLIAAHGVTGTLTCDNIAMLDELANMDTEENEIELSDIPSWTSERGGKVLVNVDSFGAAGDGESDDTEAFRKAWNVSCSTPNSVFLVPQGRRYLVNATKFIGPCKGTLIIQIDGTIVAPDEPKNWDSKLARVWLDFSKLEKAVFQGAGVIDGSGKKWWEASCKKNKSNPCKGAPTALTIDSSSGIKVKGLTIQHSQQIHFTISRCNSVRIYGVKVSSPDDSPNTDGIHISESTNVIIQDSKIGAGDDCISIVNASSNIKMKRIFCGPGHGISIGSLGKDNSTGIVTKVILDTAVIKDTTNGVRIKTWQGGSGYVRGVRFQNVKMENASNPIIIDQFYCDSPTTCQNQTSAVEISEIMYQNISGTTRSAKAIQFACSDTVPCSSLVLSNVDLEKQDGTVETYCHSAQGFGYGVVHPSADCLNSSDNTSEVITEPITVEEEEDTHHTEL* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3676 458 ProSitePatterns Polygalacturonase active site. 273 286 IPR000743 GO:0004650|GO:0005975
Ahy13g3676 458 Pfam Glycosyl hydrolases family 28 94 413 IPR000743 GO:0004650|GO:0005975
Ahy13g3676 458 Gene3D - 51 457 IPR012334 -
Ahy13g3676 458 PANTHER BNAA08G20470D PROTEIN 2 442 - -
Ahy13g3676 458 SMART pbh1 243 264 IPR006626 -
Ahy13g3676 458 SMART pbh1 296 317 IPR006626 -
Ahy13g3676 458 SMART pbh1 325 346 IPR006626 -
Ahy13g3676 458 SMART pbh1 216 242 IPR006626 -
Ahy13g3676 458 SMART pbh1 266 286 IPR006626 -
Ahy13g3676 458 PANTHER - 2 442 - -
Ahy13g3676 458 SUPERFAMILY Pectin lyase-like 60 432 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3676 Ahy-Chr13 135465877 135470363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3676 27 458 Glycoside Hydrolase AT1G23460 70.575 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3676 - - gmx:100804067 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3676 13 135465877 135470363 Ahy13g3676 13 135465877 135470363 ECH