Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3078 ATGAAGGGTGGGACGGTTCAGATCAGCTGGCACGAGAGTAAGCCCATCTTATCCCTTGATTTCCACCCTTCCTCCTCCACTCTCGCTACCGCCGGCGCCGATTTCGACATCAAGTTATGGTCGATTAAGCCATCCGAATCACAGAAGCTCCCCACAGTTACCTATCTCAACAGCTTGTCTTCTTATCATTCTTCCTCTGTCAATGTTATTCGCTTCTCTTCTTCCGGGGAGCTACTAGCCTCTGGTGCTGATGGAGGTGACCTGTTAATATGGAAGTTACATTCTACTGATGCTGGCCAGACATGGAAGGTTCTTAAGACTTTACGATCTCATCACAAGGATATCCTTGACCTGCAGTGGTCTCCTGATGCCAATTATATCATATCTGGATCAGTTGATAATTGTTGCATTATATGGGATGTAAACAAAGGCACTAACCTTCAAACGTTGGATGCCCATGCACATTATGTTCAGGGAGTTGCATGGGACCCTCTAGGGAAGTATGTTGCCTCTCTTAGTTCTGACAGGACATGCCGAATTTACATCAATAAGCCTCATAAATCAAAGGGAATTGAGAAAATCAATTACGTTTGTCAGCAAGTTATTTCCAAGGCAGAACAGCCATTATTCAAGAATTCTAAGTCTACAAAGTATCATCTATTTCATGATGAGACGTTGCCATCTTTCTTCAGAAGATTATCCTGGTCTCCTGATGGTTCATTTCTACTTGTGCCTGCAGGTTCTTACAAAATTGGCACTGGATCTGATGCTGTATATGCGACTTACATATTTTCTAGAAACGATCTTTCTCGGCCTGCTATACAGCTTCCTTCTGCAAGCAAGGCTGTTGTTGCTGTACGGTTCTGCCCCATATACTTTAACCTTCGGGGAACAAACTCAGATTGCTTATTTAAGCTCCCATATCGCATCATATTTGCCGTGGCCACTTTGAATTCACTGTTCATTTATGACACTGAGAGCACTCTTCCAATAGCTGTATTAGCTGGTCTTCACTATTCCTCAATAACGGACATCAGCTGGTCACCTGATGCCCGTTATTTGGCTTTATCTTCACAAGATGGTTTCTGCTCTTTGGTGGAATTTGAAAATGACGAACTTGGAACACCTTTCTCTTTATCAGATGGAAAGGTGTCAGACAAGGATATTAAAAGTCTGCTGCAGACAGCCAATGACACCATTGTACCAATTAGGAATGTTGGTCCAGTTGTAGATGAAAATTCGAAAATGCAAGCAGAAGAAGGTGCTGATTGTATGATCATTGAATCGGTTAATACTGGTACAGATTTATTAGAAAGCAGGGAAACTTCTGCACAAAGAAAGGCTGATGACAGTGACATGATCAAGTCAACTGGGAGTGCTCAATCTGCTATGACTGACAGTGAGACAAATGAAGCTGAAGAGAAAGCTGATAAGATGGCTGCTGAGGCAACTGTGAATGTTAAAGAGGTTGTATCAGATTGTAGGAAAAAGAAAGCAGAAGAGGGTGATGATGTGGCCACTCAGCCAACTGGGAGTGTTGAAGAAGCTGATTTAGGTAGTAGAAAAATTGAAGCTGAAGACAAGGCAGAGAAACAAGTATTGAGTTCAGAAGAGAAGGAAGAGAAGTCACAATCAAGTTTAGATGGTAAAAAATCAGGACCAAATGAAGAAACAGCAGGGAAACAAATTTCCAGTTCAAAGAGTACACCCATTCCTAACAAGCCAGCCAGGAAGCGTATTACGCCCATTGCAATTGATCCATGA 1764 0.424 MKGGTVQISWHESKPILSLDFHPSSSTLATAGADFDIKLWSIKPSESQKLPTVTYLNSLSSYHSSSVNVIRFSSSGELLASGADGGDLLIWKLHSTDAGQTWKVLKTLRSHHKDILDLQWSPDANYIISGSVDNCCIIWDVNKGTNLQTLDAHAHYVQGVAWDPLGKYVASLSSDRTCRIYINKPHKSKGIEKINYVCQQVISKAEQPLFKNSKSTKYHLFHDETLPSFFRRLSWSPDGSFLLVPAGSYKIGTGSDAVYATYIFSRNDLSRPAIQLPSASKAVVAVRFCPIYFNLRGTNSDCLFKLPYRIIFAVATLNSLFIYDTESTLPIAVLAGLHYSSITDISWSPDARYLALSSQDGFCSLVEFENDELGTPFSLSDGKVSDKDIKSLLQTANDTIVPIRNVGPVVDENSKMQAEEGADCMIIESVNTGTDLLESRETSAQRKADDSDMIKSTGSAQSAMTDSETNEAEEKADKMAAEATVNVKEVVSDCRKKKAEEGDDVATQPTGSVEEADLGSRKIEAEDKAEKQVLSSEEKEEKSQSSLDGKKSGPNEETAGKQISSSKSTPIPNKPARKRITPIAIDP* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3078 587 MobiDBLite consensus disorder prediction 548 572 - -
Ahy13g3078 587 MobiDBLite consensus disorder prediction 517 547 - -
Ahy13g3078 587 Pfam WD domain, G-beta repeat 63 92 IPR001680 GO:0005515
Ahy13g3078 587 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Ahy13g3078 587 Pfam WD domain, G-beta repeat 102 140 IPR001680 GO:0005515
Ahy13g3078 587 Pfam WD domain, G-beta repeat 10 41 IPR001680 GO:0005515
Ahy13g3078 587 Pfam WD domain, G-beta repeat 338 363 IPR001680 GO:0005515
Ahy13g3078 587 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Ahy13g3078 587 Gene3D - 2 183 IPR015943 GO:0005515
Ahy13g3078 587 Gene3D - 184 392 IPR015943 GO:0005515
Ahy13g3078 587 MobiDBLite consensus disorder prediction 438 484 - -
Ahy13g3078 587 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 95 - -
Ahy13g3078 587 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Ahy13g3078 587 SMART WD40_4 327 367 IPR001680 GO:0005515
Ahy13g3078 587 SMART WD40_4 143 182 IPR001680 GO:0005515
Ahy13g3078 587 SMART WD40_4 3 41 IPR001680 GO:0005515
Ahy13g3078 587 SMART WD40_4 101 140 IPR001680 GO:0005515
Ahy13g3078 587 SMART WD40_4 52 92 IPR001680 GO:0005515
Ahy13g3078 587 SUPERFAMILY WD40 repeat-like 13 409 IPR036322 GO:0005515
Ahy13g3078 587 PRINTS Beta G protein (transducin) signature 108 124 IPR001632 -
Ahy13g3078 587 PRINTS Beta G protein (transducin) signature 164 181 IPR001632 -
Ahy13g3078 587 PRINTS Beta G protein (transducin) signature 127 141 IPR001632 -
Ahy13g3078 587 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Ahy13g3078 587 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 587 IPR045145 GO:0006335
Ahy13g3078 587 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Ahy13g3078 587 MobiDBLite consensus disorder prediction 468 482 - -
Ahy13g3078 587 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 587 - -
Ahy13g3078 587 MobiDBLite consensus disorder prediction 498 587 - -
Ahy13g3078 587 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Ahy13g3078 587 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3078 Ahy-Chr13 123663003 123667587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3078 24 181 Miscellaneous Gene Families AT5G08390 29.375 9.86e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3078 K10751 - gmx:100784411 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3078 13 123663003 123667587 Ahy13g3078 13 123663003 123667587 ECH
Ahy13g3078 13 123663003 123667587 Ahy3g2747 3 120842140 120846380 hybridization