Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2877 ATGGGTTTCCATGCTCTTGCCAATAGCAAATCCTTCTTCACCAGCGAAACCCACCTTCCTTACCTTCCTTCATTTTCATCTGATAGAAGAAGACCAACACCAACACCACTGACAAGAACACTTCATTTGAATCAAAGACCCAATTCACTAAGGGTCTTTGCCTCGCAGGAAGAGCCCCCGAAGCTCAATAGCCAGGACTTGATGGAACTCAAGTTTGGACGCTTACTTGGAGAGGACCCTAAGCTTACTCTCGCCAAGATAATGGGAAGAAAAGCTAACCCTGATGCTACTTTTCTTGATATTGAGAAATCGTATTATAAGAAGGGGAAACACGTTGAGGTGGAGGAAGTTCCATTTGAAGGTTCTAAGGAAAGGAAGTCATCGAGTAAATTGGATGGTTTGGGTTTGGTGCGGCCTGTTCCGGCTAAAGGGGCAAGCTTCCAATCCAGTGATAACAAAGTTCCATTGGAGATTAAGAAACCGAGCCAACAGCAGAGTAATGCAGGGAATGTCAATAAAAGTATTCTGAAAAAGCCACTGCAGAGTAATGCAGGGAGTCTTAATATAAGTAGTGCTCCTAATGTTATTCTGAGAAAGCCAACCGTGTATAAAGAGGATGACGAAGACGTGTTGTCGAGGTTGAGAGTAAGACCAAATTTGTATCAGCACATGCGGGATGGACAAGTGAAGGAGAAGTTTAGTGATATGTCGCTTTTGAGGAAGCCTGAACCACCAATTGCCAAGGATGAAGATACAAACCAAGAGTCTTCTACTCGTGCGGACAATGAAAATGATTTGAAGATCAGTGTAGAAGATTCAAGAGGTAAAGCTGGTAACTGGACATTATTAGAACAGCCTCATAGACCGGAGAGCAACAATGATGAACAGTCTGCTGATTCAAATGTTATGCTTAAAAATGATGAATTGGAGCAGCATTATGAGTTCCAACAGGAGCTGTCTGATTCAAGTCAACTGTCAAATTTAAATTCAGTTGATAAAGTGGACTTGTCTGTGCAAGTTCCGCTACAGGGAAAGCCGCAAAGATTAGACCAACATGTGAAGCAAACCTCAGATGTTGTTGAAGAGAATGCTTTTATGAATACCGGAGGTTACAAAAACAATGATGAACTAGGGAATCTTGTCGATGTTTCAGATTTTCAGGAGGGTGAAGATGCTGATTGGACCAGGGCGGAAGATTTGATTAGGAATGGAGATAGGGCAGATGTGGAAATATTAAGTTGTAGTAGCAAAGGCTTCATTGTATCATTTGGTTCTTTGGTAGGATTCCTGCCGTACCGTAACCTTGTTTCCAAGTGGAAGTTCTTAGCTTTTGAGTCATGGTTAAGAAAGAAGGGATTGGATCCATCCATGTACAAGCAGAGTTTAGACACTATTACAAGCTATGATGCTGAAAAAAATAAAATTTCTCCCAATTCTCCCCTATATCAGGAGAATGATACTAATGTTGAAGAGAAATTTTCTCCAGATATCAAAATGGAAGATCTGTTAAGGATTTATGACCAAGAGAAAATTGAGTTTTTGTCCTCTTTTATTGGGCAGAAAGTTAGAGCAAATCTATTATCCGTAGAAAGAAAATCTAGAAAGCTCATATTTTCATTAAAACCAAAAGAGAAGGAAGACCTACTTGAGAAGAAGAGAAATCTCATGGCTAGACTTCAGGTTGGGGATATAGTAAAATGTTGCATCCAGAAGATAACTTACTTTGGGATTTTTGTAGAGCTTGAAGGGGAGTCTGCACTAATTCATCAATCAGAATTATCATGGGATGCCACCTTGAACCCAGCATCATACTTCAAGATTGGTCAGGTTATAGAGGCAAAAGTTCTGCAATTAGACTTTGCTCTTGGGCGCATATCTTTATCGTTAAAGGGAGTCACGCCCGATCCATTAATGGATTCCTTGGAGTCTGTAGTTGGGGAGCATGGACACTTAGATGGGAGACTGGAAGAAGCTCAAACAGATGAGGAGTGGCCTGAAGTTGAATCTCTCATCAAAGAATTACAAAAGATTGAGGGGATCGAGTCTGTTTCAAAAGGCCGGTTCTTCAGAAGCCCTGGTTTGGCACCAACTTTCCAGGTTTACATGGCATCGATCTTCGACAATCAGTACAAGTTGCTGGCTCGATTTGGAAACAAAATACAAGAGGTGATAGTTGAAACGTGTATAGATAAAGAAAGGATGAAGTCGGTGATAATGACATGTACCAATAGAGTGGAATAG 2241 0.4096 MGFHALANSKSFFTSETHLPYLPSFSSDRRRPTPTPLTRTLHLNQRPNSLRVFASQEEPPKLNSQDLMELKFGRLLGEDPKLTLAKIMGRKANPDATFLDIEKSYYKKGKHVEVEEVPFEGSKERKSSSKLDGLGLVRPVPAKGASFQSSDNKVPLEIKKPSQQQSNAGNVNKSILKKPLQSNAGSLNISSAPNVILRKPTVYKEDDEDVLSRLRVRPNLYQHMRDGQVKEKFSDMSLLRKPEPPIAKDEDTNQESSTRADNENDLKISVEDSRGKAGNWTLLEQPHRPESNNDEQSADSNVMLKNDELEQHYEFQQELSDSSQLSNLNSVDKVDLSVQVPLQGKPQRLDQHVKQTSDVVEENAFMNTGGYKNNDELGNLVDVSDFQEGEDADWTRAEDLIRNGDRADVEILSCSSKGFIVSFGSLVGFLPYRNLVSKWKFLAFESWLRKKGLDPSMYKQSLDTITSYDAEKNKISPNSPLYQENDTNVEEKFSPDIKMEDLLRIYDQEKIEFLSSFIGQKVRANLLSVERKSRKLIFSLKPKEKEDLLEKKRNLMARLQVGDIVKCCIQKITYFGIFVELEGESALIHQSELSWDATLNPASYFKIGQVIEAKVLQLDFALGRISLSLKGVTPDPLMDSLESVVGEHGHLDGRLEEAQTDEEWPEVESLIKELQKIEGIESVSKGRFFRSPGLAPTFQVYMASIFDNQYKLLARFGNKIQEVIVETCIDKERMKSVIMTCTNRVE* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2877 746 Gene3D - 542 632 IPR012340 -
Ahy13g2877 746 MobiDBLite consensus disorder prediction 225 272 - -
Ahy13g2877 746 ProSiteProfiles S1 domain profile. 562 630 IPR003029 GO:0003676
Ahy13g2877 746 Pfam S1 RNA binding domain 559 630 IPR003029 GO:0003676
Ahy13g2877 746 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 20 746 - -
Ahy13g2877 746 SMART S1_6 560 630 IPR022967 -
Ahy13g2877 746 SMART S1_6 402 541 IPR022967 -
Ahy13g2877 746 SUPERFAMILY Nucleic acid-binding proteins 547 653 IPR012340 -
Ahy13g2877 746 MobiDBLite consensus disorder prediction 225 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2877 Ahy-Chr13 115244522 115248781 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2877 - - lang:109342045 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2877 13 115244522 115248781 Ahy13g2877 13 115244522 115248781 ECH
Ahy13g2877 13 115244522 115248781 Ahy3g2540 3 112729130 112734041 hybridization