Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2680 ATGGGCTGTTCTTTCAGCAAACAACGGCAGAGGCTTATTGGGCATCATAAACAGGAAGAAGACCCAGCAGCAGTTCTTGCTGCCCAAACCTGCTTTGATCTTTGTGATATTGAAGCACTGTATGAGCTGTTCAAGAAATTAAGTAGCTCCATAGTTGATGACGGCCTCATCAGCAAAGAGGAATTTCAACTTGGCTTATTTGGTAACAGCAAGAAAAGAAACCTTTTTGCCGATAGGATATTTGATTTATTTGATTCGGGAAAGGATGGGGTGATAGAGTTTGGAGAGTTTGTTAGAGGACTCAGCGTGTTCCATCCTGCAGCGCTCCAACCACAAAAAGCAGCTTTTGCATTTCGGCTCCACGATATACGGCAAAGTGGCTTTATTGAACGCGACGAGGTAAGAGAGATGATTGTGGCACTACTAAGCGAGTCCCAATTGGTGTTTTCTGATGACATAATTCAGCTCATAATCGATAAGGCTTTTCAAGAAGCAGATCTCAAAGGAGATGGTAAAATTGATCCAGACGAGTGGCAACAATTTGTGGCTCGAAATCCATCTTTATTGAGGAATATGACAATTCCACATTTGAAGGACCTTAATAAGGAGTTTCGTAATTTTGAATCAAGTTCAGACTTTATTGAAGATGATATAAGAAACCTCTGA 666 0.4114 MGCSFSKQRQRLIGHHKQEEDPAAVLAAQTCFDLCDIEALYELFKKLSSSIVDDGLISKEEFQLGLFGNSKKRNLFADRIFDLFDSGKDGVIEFGEFVRGLSVFHPAALQPQKAAFAFRLHDIRQSGFIERDEVREMIVALLSESQLVFSDDIIQLIIDKAFQEADLKGDGKIDPDEWQQFVARNPSLLRNMTIPHLKDLNKEFRNFESSSDFIEDDIRNL* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2680 221 CDD EFh 113 183 IPR002048 GO:0005509
Ahy13g2680 221 PANTHER CALCINEURIN B-LIKE PROTEIN 5 1 212 - -
Ahy13g2680 221 Gene3D - 23 216 - -
Ahy13g2680 221 PRINTS Recoverin family signature 127 145 - -
Ahy13g2680 221 PRINTS Recoverin family signature 80 101 - -
Ahy13g2680 221 PRINTS Recoverin family signature 173 193 - -
Ahy13g2680 221 Pfam EF hand 158 182 IPR002048 GO:0005509
Ahy13g2680 221 ProSiteProfiles EF-hand calcium-binding domain profile. 72 107 IPR002048 GO:0005509
Ahy13g2680 221 SUPERFAMILY EF-hand 25 198 IPR011992 -
Ahy13g2680 221 SMART efh_1 76 104 IPR002048 GO:0005509
Ahy13g2680 221 SMART efh_1 113 141 IPR002048 GO:0005509
Ahy13g2680 221 SMART efh_1 157 185 IPR002048 GO:0005509
Ahy13g2680 221 ProSiteProfiles EF-hand calcium-binding domain profile. 109 144 IPR002048 GO:0005509
Ahy13g2680 221 ProSiteProfiles EF-hand calcium-binding domain profile. 153 188 IPR002048 GO:0005509
Ahy13g2680 221 PANTHER CALCINEURIN B 1 212 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2680 Ahy-Chr13 98730409 98732597 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2680 30 221 EF-hand Containing Proteins AT5G24270 61.979 9.60e-86 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2680 K06268 - vra:106766823 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2680 13 98730409 98732597 Ahy13g2680 13 98730409 98732597 ECH
Ahy13g2680 13 98730409 98732597 Ahy3g2359 3 94917454 94924800 hybridization