Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2471 ATGTGTTGGGAACTTGTTTTCAGGCTTGAGTTGGGCTATGCACTTCCCTGGAATTGGATGATAAGAGGTTTTGATGTTGGGTGGCATGATTTTGCATTGTTGTTTTACTTCATGATGTTGGGTAGTGGAGTCTCGCCTGATAAATACACTTTCCCTTACATTATAAAAGCTTGTGGTGGTTCAAATAATGTTGCATTGGGTAAGATGGTGCATAACACAATTCGGTCAATAGGGATCCATGTGGACTTGTTTGTTGGTAGTGCCTTGATCAAGTTGTATGCAGATAATGGGTGTATTTGTGATGCAAGGCAAGTGTTCGATGAATTGTCTGTAAGAGACTGCGTTTTGTGGAATGTCATGCTAAATGGTTATGTAACTAGCAGTGATTTTAACAATGCAATAGACTTTCAGGAAATGAGGAATTGTTATATCAAACCCAATTCAGTAACTTTTACTTGTATGTTATCATTATGCTCTACAAGAGGGATGTTTTATGGTACTCAGCTTCATGGTCTTGTTATTGGTAGTGGGTTCCAGCATGATTCGCAGGTAGCAAACACACTACTTTCCATGTATTCCAAATGTGGTAACCTTGTTGATGCATGTAGGTTATTTGATTCAATGCCACAGACTGATACAGTTACTTGGAATGGGTTGATTGCTGGATATGTGCAAAATGGATTGGCAGATGAGGCCTTAACTTTATTTAATGCAATGATCTCTGCTAGTGTCAAACCAGATTCGATCACTTTCGCAAGTTTCCTTCCTTCTATTGTTGAATCTGGTAGTAGTAGTACCAAACATTGTAAAGAAATTCATGGTTATATAGTCCGGCACAGGATTCCTTTTGATGTTTATTTAAAGAGTTCACTTATTGACGTATACTTAAAGAATAGGGACGTGGATACGGCATGCAAGATTTTCCAGCAGAATACTTCAGTTGATGTTGCAGTTTGTACAGCTATGATCTCGGGCTATGTACTTAATGGTCTGTATATTGATGCTATAGATTTTTTTAGGTGGTTAGTTCAGGAGGGAATGGTGCCTAATTGCCTGACCATGGCTGCTGTTTTGCCCGCATGTGCTGCTTCGGCTTCTCTGAGATTAGGGAAAGAATTACATTGTGTCATTCTGAAAAATCAACTTGATAGTGTGCTTCATGTGGGGTCTGCCATCACAGATATGTATTCAAAATGTGGAAGACTAGATCTTGCATATCAATTTTTCAGAAGGATGCCTGAAAGAGATAGTGTATGTTGGAACTCACTGATTACAAGCTTCTCACAGAATGGTAAACCAGAAATGGCTATTAATATTTTTCGTGGAATGGGAAGGAGTGGAACCAAGTTTGATTCCGTGAGCCTATCATCTGCACTTTCTGCGAGTGCAAATATACCGGCACTCTATTCTGGGAAAGAGATGCACGGCTTTGTGATAAGAAATGCATTTACTTCTGACACTATTGTTACAAGTGCACTGATAGACATGTATTCTAAATGTGGAAAATTAGCCATGGCTCAGTATGTGTTTGACCTGATGTACTGGAGGAATGAAATTTCATGGAATAGCATCATTGCTGCATATGGAAACCATGGTCGCCCCAGGGAATGTCTCGATCTATTCCATGAAATGTTAAAAGCCGTTCACCCGGATCACGTTACTTTCCTTGTTATAATATCTGCTTGTGCTCATGCTGGCCTAGTTGATGAAGGCATATCATATTTCCGTTGCCTGACTGAAAGCTATGGGATTTGTGCTAAGATGGAGCACTATGCATGCATGGTAGATTTGTATGGTCGAGTTGGTTGTTTGCACGAGGCACTCGATACTATAAAGAGCATGCCGCGTGCTCCAGACGCAGGTGTTTGGGGGACACTACTAGGAGCTTGTCGGGTTCATGGCAATGTTGAGTTGGCCAGACTAGCTTCCGAACATCTTCTGGAGTTAGACCAAAATTCGGGGTACTATGTATTGCTTTCGAATATACATGCCGGTGCAGAGTGGTCAGATGTTCTTAAGATTCGAAGTCGAATGAAGGAAAAAGGAGTTCAGAAAATATGCGGATACAGCTGGATTGATGTGAACGGCAGCACCCATATGTTTTCTGCTGCTGATGGTAGTCACCCACAATCTTTTGAGATCTATATGATTCTGGAGAGTCGTCTCCTTGAGTTAAAAAAACAGGGTTATGTTCCTCAACCATACCTTCCACTGCATCCACAAGTCGTTGTAAAAACTTGA 2241 0.4079 MCWELVFRLELGYALPWNWMIRGFDVGWHDFALLFYFMMLGSGVSPDKYTFPYIIKACGGSNNVALGKMVHNTIRSIGIHVDLFVGSALIKLYADNGCICDARQVFDELSVRDCVLWNVMLNGYVTSSDFNNAIDFQEMRNCYIKPNSVTFTCMLSLCSTRGMFYGTQLHGLVIGSGFQHDSQVANTLLSMYSKCGNLVDACRLFDSMPQTDTVTWNGLIAGYVQNGLADEALTLFNAMISASVKPDSITFASFLPSIVESGSSSTKHCKEIHGYIVRHRIPFDVYLKSSLIDVYLKNRDVDTACKIFQQNTSVDVAVCTAMISGYVLNGLYIDAIDFFRWLVQEGMVPNCLTMAAVLPACAASASLRLGKELHCVILKNQLDSVLHVGSAITDMYSKCGRLDLAYQFFRRMPERDSVCWNSLITSFSQNGKPEMAINIFRGMGRSGTKFDSVSLSSALSASANIPALYSGKEMHGFVIRNAFTSDTIVTSALIDMYSKCGKLAMAQYVFDLMYWRNEISWNSIIAAYGNHGRPRECLDLFHEMLKAVHPDHVTFLVIISACAHAGLVDEGISYFRCLTESYGICAKMEHYACMVDLYGRVGCLHEALDTIKSMPRAPDAGVWGTLLGACRVHGNVELARLASEHLLELDQNSGYYVLLSNIHAGAEWSDVLKIRSRMKEKGVQKICGYSWIDVNGSTHMFSAADGSHPQSFEIYMILESRLLELKKQGYVPQPYLPLHPQVVVKT* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2471 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Ahy13g2471 746 PANTHER OS01G0913400 PROTEIN-RELATED 321 732 - -
Ahy13g2471 746 PANTHER OS01G0913400 PROTEIN-RELATED 15 326 - -
Ahy13g2471 746 Pfam PPR repeat 394 415 IPR002885 -
Ahy13g2471 746 Pfam PPR repeat 289 309 IPR002885 -
Ahy13g2471 746 Pfam PPR repeat 319 340 IPR002885 -
Ahy13g2471 746 Pfam PPR repeat 418 447 IPR002885 -
Ahy13g2471 746 Pfam PPR repeat 186 209 IPR002885 -
Ahy13g2471 746 Pfam PPR repeat 491 513 IPR002885 -
Ahy13g2471 746 Pfam PPR repeat 591 616 IPR002885 -
Ahy13g2471 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 547 IPR002885 -
Ahy13g2471 746 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTIC-LIKE 321 732 - -
Ahy13g2471 746 Gene3D Tetratricopeptide repeat domain 374 466 IPR011990 GO:0005515
Ahy13g2471 746 Gene3D Tetratricopeptide repeat domain 265 373 IPR011990 GO:0005515
Ahy13g2471 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Ahy13g2471 746 Pfam E motif 633 693 IPR046848 -
Ahy13g2471 746 PANTHER OS01G0913400 PROTEIN-RELATED 146 418 - -
Ahy13g2471 746 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTIC-LIKE 15 326 - -
Ahy13g2471 746 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTIC-LIKE 146 418 - -
Ahy13g2471 746 Pfam PPR repeat family 517 563 IPR002885 -
Ahy13g2471 746 Pfam PPR repeat family 212 253 IPR002885 -
Ahy13g2471 746 Pfam PPR repeat family 113 158 IPR002885 -
Ahy13g2471 746 Gene3D Tetratricopeptide repeat domain 165 264 IPR011990 GO:0005515
Ahy13g2471 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 211 IPR002885 -
Ahy13g2471 746 TIGRFAM PPR: pentatricopeptide repeat domain 418 451 IPR002885 -
Ahy13g2471 746 TIGRFAM PPR: pentatricopeptide repeat domain 519 546 IPR002885 -
Ahy13g2471 746 TIGRFAM PPR: pentatricopeptide repeat domain 214 248 IPR002885 -
Ahy13g2471 746 TIGRFAM PPR: pentatricopeptide repeat domain 318 351 IPR002885 -
Ahy13g2471 746 TIGRFAM PPR: pentatricopeptide repeat domain 186 209 IPR002885 -
Ahy13g2471 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Ahy13g2471 746 Gene3D Tetratricopeptide repeat domain 493 713 IPR011990 GO:0005515
Ahy13g2471 746 Gene3D Tetratricopeptide repeat domain 26 164 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2471 Ahy-Chr13 61471513 61473969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2471 38 739 Glycoside Hydrolase AT3G49170 33.705 1.77e-123 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2471 - - aip:107630023 1305.43