Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2439 ATGAATACTTCTTCTCTCTCCTTCCTTCAATCAGCGTTCCCCACTTCCTCCTCCTTCCTCCCACCGAACCGGCTAACCCCTTCCTTCTGTTTCGTCGTTGAAGCCCATTCCACCACCCGCCGACAAGACAGGACCGCCCGCCACACCCGCATCAGGAAGAAGGTTGAAGGGACACCAGAAAGGCCACGATTGTCCGTGTACCGATCCAACAAGCATCTTTCTGTCCAGGTCATAGATGACACCAACATGCACACTCTTGCTTCGGTTTCAACAATGCAGAAGGCAGTTTTTGAAGAGTTCAACTACACAGCTGGTCCTACAGTTGAAGTAGCAAAGAGGGTTGGTGAAATCATTGCAAAGTCCTGTCTGGAGAAAGGGATCACAAAGGTGGCCTTCGACCGAGGTGGATACCCGTACCATGGTCGTGTTCAAGCACTCGCAGATGCAGCTCGCGAACATGGCCTAGAGTTCTAA 474 0.5169 MNTSSLSFLQSAFPTSSSFLPPNRLTPSFCFVVEAHSTTRRQDRTARHTRIRKKVEGTPERPRLSVYRSNKHLSVQVIDDTNMHTLASVSTMQKAVFEEFNYTAGPTVEVAKRVGEIIAKSCLEKGITKVAFDRGGYPYHGRVQALADAAREHGLEF* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2439 157 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 29 157 - -
Ahy13g2439 157 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 29 157 IPR005484 GO:0003735|GO:0005840|GO:0006412
Ahy13g2439 157 TIGRFAM L18_bact: ribosomal protein uL18 40 157 IPR004389 GO:0003735|GO:0005840|GO:0006412
Ahy13g2439 157 Hamap 50S ribosomal protein L18 [rplR]. 39 157 IPR004389 GO:0003735|GO:0005840|GO:0006412
Ahy13g2439 157 CDD Ribosomal_L18_L5e 51 155 - -
Ahy13g2439 157 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 39 157 IPR005484 GO:0003735|GO:0005840|GO:0006412
Ahy13g2439 157 Gene3D - 38 157 - -
Ahy13g2439 157 SUPERFAMILY Translational machinery components 40 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2439 Ahy-Chr13 56417065 56419740 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2439 K02881 - gmx:100778569 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2439 13 56417065 56419740 Ahy3g2191 3 69641118 69643788 hybridization