Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2329 ATGAAGATGGTTCTCGCCGCTATCTTCTTAATATTTTCTCTCTTCACCTTCTCCCAGGCTTCCGTAGTAGATTTCTGTGTTGCTGACTACACAGCTCCCAACGGCCCTGCAGGGTATTCTTGTAAAAGTCCTGCAAAGGTCACCGTAGACGATTTCGTCTATAGTGGCCTTGGAGCCGTTGGAAACACCTCAAACATCATAAAAGCCTCTGTGACGCCTGCATTTGATGCCCAGTTTGCAGGCGTCAACGGCCTTGGAATCTCCGCGGCCCGTTTAGACTTGGCACCAGGTGGAGTGGTACCACTCCACACGCACCCCGGTGCCTCGGAGCTCCTTGTTGTGGTGCAAGGAACGATCTGTGCAGGGTTCGTTTCTTCCGACAACACGGTGTATTTCAAGACCCTCAAGAAGGGAGATGTTATGGTGTATCCTCAAGGGCTTTTACACTTCCAACTCAATGGTGGTGGGACTCAGGCTTTGGCGTTTGTGAGCTTCAGCAGTGCCAATCCTGGACTTCAAATCTTGGACTTTGCGTTGTTCAAGAGTGATTTCCCAACTGAGTTGATAACGCAGACAACTTTTCTTGATGCTGCTCAGGTGAAGAAGCTCAAGGGTGTGCTTGGAGGCTCAGGTTAA 636 0.5016 MKMVLAAIFLIFSLFTFSQASVVDFCVADYTAPNGPAGYSCKSPAKVTVDDFVYSGLGAVGNTSNIIKASVTPAFDAQFAGVNGLGISAARLDLAPGGVVPLHTHPGASELLVVVQGTICAGFVSSDNTVYFKTLKKGDVMVYPQGLLHFQLNGGGTQALAFVSFSSANPGLQILDFALFKSDFPTELITQTTFLDAAQVKKLKGVLGGSG* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2329 211 SMART Cupin_1_3 55 201 IPR006045 -
Ahy13g2329 211 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 9 207 - -
Ahy13g2329 211 SUPERFAMILY RmlC-like cupins 21 205 IPR011051 -
Ahy13g2329 211 ProSitePatterns Germin family signature. 98 111 IPR019780 GO:0030145
Ahy13g2329 211 Gene3D Jelly Rolls 19 210 IPR014710 -
Ahy13g2329 211 Pfam Cupin 61 201 IPR006045 -
Ahy13g2329 211 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 9 207 - -
Ahy13g2329 211 CDD cupin_OxOx 18 207 - -
Ahy13g2329 211 PRINTS Germin signature 166 181 IPR001929 GO:0030145
Ahy13g2329 211 PRINTS Germin signature 103 123 IPR001929 GO:0030145
Ahy13g2329 211 PRINTS Germin signature 133 153 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2329 Ahy-Chr13 50069748 50070610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2329 1 210 Miscellaneous Gene Families AT5G20630 67.143 3.76e-101 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2329 - - gmx:100806553 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2329 13 50069748 50070610 Ahy13g2329 13 50069748 50070610 ECH
Ahy13g2329 13 50069748 50070610 Ahy3g2040 3 47041309 47042318 hybridization