Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1823 ATGGTAGTACTCAGCCGTCTGAAATCCGCTTTACGTCTTCTTCCTCGTTCTTCCGTGACCTACGCAACCTCTGCCTCTTCCACCTCCAACCTCTCACCGGCGAAGAGGAATCAAAGCGCCTTCGTTTATGTCCCGCAGGTTTTGTACCGTCGGATCTTCCATGTGAGAGATCCAACTCACCCGACTGTTACGATTCTCGAGCAGTGGGTTCAGGATGGCGGAACTCTTAGCTACGATAAACTGCTAGTGGTTATCAAGCAACTTAGATCACGCAAAAGATATAAAAACGCACTCGAGGTATCATTTTGGATGTCTGAGAAAGGATACTCTGAATCTGGATCTGCAGATTTTAGTTTAAGACTGGACTTGATTGCAAAGGCTAACGGAATAGAAGAAGCTGAATCCTATTTTGATAGCATTCCGAAAGACTCAAGAGCTGCAGAATGTTACAGCTCTCTTCTTAATTGCTATGCTCAAGTTAGGGATGTGGATAAAGCTGAAAGGATCATGCTGCAGATGAAGCATTTGGGTTTCGCAAGGTCTACTATGGCAAGAAATTCTTTGCTTAACCTCTACTATCAAACACAAAACTATGACAAAGTGGAAAATTTGTTGCTTGAAATGAAAGAAGAGGGTATTAAATTCGATAGATTTACATTCGCCACCTTGATTAATACATATGCGGCCAAATCTGATATAGAAGGAATCGACAAACTTCTTGCACAGTTAGAAGATGATCCATCTTATTCCCAACATGTAGATTGGTGGAGTGTTTATGCTGTGGCAGCCAATTGTTATGGAAAACTCGGGCTTTGTGATAAAGCTTTTAACGCTTTAAAGAAATCAGAGGAGCGCCTGAGTTCTACAATCTGGAAAGAGGCCTTTCCTTACCTTATGACTCAATATGCAACAATAGGGAAGAAAGAAGAAGTGACGAGGTTGTGGAATATTTATAAGATGGATGGGAAGTTACTTAAAAGAGACTATTATTCAGCTGTAATAAGTTCATTTCTCAAGTTGGATGACATTGAACTTGCCAAGAGTATCTTTGAGGAGTGGGAATCTAGAAACCGGTATTTCAGAAATTTCCTTATTCCGAACATGATGATAGCAGCTTACAGCAGAAAGGGCAATATGGAGGAAGCTGAAGCCATTGTTAATAGGACAATCATGAGGGAAGGAAAGCCAAATTTATGGACTTGGTCAGGGCTCTTGCTTGGATATATTCCACAGAGAAATTTTCCGATGGCTGTTCGATGTATGAAAGAGGCAGTTTCTATCTGTGAAGTGGGCTGTAAGTGGAGGCCGCTACCAGAATCCTTAGCTGCCATTTTTCAGTACTTGAAATTTAATGGAGATATGGAGGAGACAGAGGATTTGATAAGGTTACTCAGCAGCAAGAATATTATCTCCCTTGATGTTCATAACAAGCTGATGAGTTGGATTAAGGATGTGGAATCAAATGTACCTGCAATTGATGTGCTGGGAGGCGATTCACATAAACAAACAGGTGAAATTTCAGAGCCAGAGGAAGATTGGAACAACCTGACTTCTACTTTAGCCATCAATAAAATGTTAAGGGATGACTGTCAATTAGGCAAATCATGA 1608 0.4104 MVVLSRLKSALRLLPRSSVTYATSASSTSNLSPAKRNQSAFVYVPQVLYRRIFHVRDPTHPTVTILEQWVQDGGTLSYDKLLVVIKQLRSRKRYKNALEVSFWMSEKGYSESGSADFSLRLDLIAKANGIEEAESYFDSIPKDSRAAECYSSLLNCYAQVRDVDKAERIMLQMKHLGFARSTMARNSLLNLYYQTQNYDKVENLLLEMKEEGIKFDRFTFATLINTYAAKSDIEGIDKLLAQLEDDPSYSQHVDWWSVYAVAANCYGKLGLCDKAFNALKKSEERLSSTIWKEAFPYLMTQYATIGKKEEVTRLWNIYKMDGKLLKRDYYSAVISSFLKLDDIELAKSIFEEWESRNRYFRNFLIPNMMIAAYSRKGNMEEAEAIVNRTIMREGKPNLWTWSGLLLGYIPQRNFPMAVRCMKEAVSICEVGCKWRPLPESLAAIFQYLKFNGDMEETEDLIRLLSSKNIISLDVHNKLMSWIKDVESNVPAIDVLGGDSHKQTGEISEPEEDWNNLTSTLAINKMLRDDCQLGKS* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1823 535 Pfam PPR repeat 330 357 IPR002885 -
Ahy13g1823 535 Pfam PPR repeat 367 388 IPR002885 -
Ahy13g1823 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Ahy13g1823 535 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 29 501 - -
Ahy13g1823 535 Pfam Pentatricopeptide repeat domain 173 227 IPR002885 -
Ahy13g1823 535 Gene3D Tetratricopeptide repeat domain 306 457 IPR011990 GO:0005515
Ahy13g1823 535 Gene3D Tetratricopeptide repeat domain 79 292 IPR011990 GO:0005515
Ahy13g1823 535 SUPERFAMILY HCP-like 142 426 - -
Ahy13g1823 535 PANTHER OS12G0527900 PROTEIN 29 501 - -
Ahy13g1823 535 TIGRFAM PPR: pentatricopeptide repeat domain 149 179 IPR002885 -
Ahy13g1823 535 TIGRFAM PPR: pentatricopeptide repeat domain 367 394 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1823 Ahy-Chr13 30039259 30041267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1823 48 512 EF-hand Containing Proteins AT1G02150 29.185 2.44e-66 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1823 - - ahf:112729653 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g1823 13 30039259 30041267 Ahy13g1823 13 30039259 30041267 ECH