Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1743 ATGGCGGGTCGAGGCAAAACATTAGGATCTGGCAACGCCAAGAAGGCCACCTCTCGGAGCAGCAAGGCCGGTCTTCAATTCCCCGTTGGTCGTATTGCCCGTTTCCTGAAGGCTGGAAAATACGCCGAACGGGTCGGTGCCGGCGCCCCCGTTTACCTCGCCGCCGTCCTTGAATACCTAGCCGCCGAGGTTCTTGAGTTAGCTGGGAACGCTGCGAGAGATAACAAGAAGACCAGAATTGTGCCACGTCACATTCAATTGGCGGTTAGAAATGACGAAGAGTTAAGCAAGCTTCTTGGAGATGTAACAATTGCCAACGGTGGTGTGATGCCCAACATTCACAACCTCTTGCTTCCTAAGAAGACCGGAACCTCGTCCAAGGCTGCTGGCGATGATGATTCTTAG 405 0.5358 MAGRGKTLGSGNAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSSKAAGDDDS* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1743 134 CDD H2A 9 121 IPR002119 GO:0000786|GO:0003677|GO:0030527
Ahy13g1743 134 MobiDBLite consensus disorder prediction 1 20 - -
Ahy13g1743 134 ProSitePatterns Histone H2A signature. 23 29 IPR032458 -
Ahy13g1743 134 Gene3D Histone, subunit A 1 129 IPR009072 GO:0046982
Ahy13g1743 134 PRINTS Histone H2A signature 44 59 IPR002119 GO:0000786|GO:0003677|GO:0030527
Ahy13g1743 134 PRINTS Histone H2A signature 73 87 IPR002119 GO:0000786|GO:0003677|GO:0030527
Ahy13g1743 134 PRINTS Histone H2A signature 101 119 IPR002119 GO:0000786|GO:0003677|GO:0030527
Ahy13g1743 134 PRINTS Histone H2A signature 15 37 IPR002119 GO:0000786|GO:0003677|GO:0030527
Ahy13g1743 134 PRINTS Histone H2A signature 59 72 IPR002119 GO:0000786|GO:0003677|GO:0030527
Ahy13g1743 134 PANTHER HISTONE H2A.6 2 132 - -
Ahy13g1743 134 SUPERFAMILY Histone-fold 9 124 IPR009072 GO:0046982
Ahy13g1743 134 Pfam C-terminus of histone H2A 93 127 IPR032454 -
Ahy13g1743 134 Pfam Core histone H2A/H2B/H3/H4 11 90 IPR007125 GO:0003677
Ahy13g1743 134 PANTHER HISTONE H2A 2 132 IPR002119 GO:0000786|GO:0003677|GO:0030527
Ahy13g1743 134 SMART h2a4 4 124 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1743 Ahy-Chr13 27701970 27703265 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1743 K11251 - pop:7454400 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g1743 13 27701970 27703265 Ahy13g1743 13 27701970 27703265 ECH