Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1394 ATGGTCATATACCTGTCTCCTTCTCCTCCTTCACATTCTTCCACTTCCATACTCAGATTCTCAAACCCAAGGACACCCATTTCAGATTCTTCCTTCAAGCCCAAACCCCATTTCTCAATACCACTTTTTTCTCACTCTTTTGGCTCCAATTTTTCAACTTTAACATTCAAGCAGCAGTTCTTGAATCACAATAATAGTAGTGGCCGGTTCACACATGGAAACAGGGTTGATTTCAGGACCTTGGCTATTCCTGGGTTTGACTATGGAAACTTTGAAGGTCCTCAATCTGTTCTTGAAGCTGCTGCTGTTCTAACAGCAATCATTGTTGTTCATGAAAGTGGCCATTTCCTTGCTGCTTCACTTCAAGGTATCCATGTGAGTAAGTTCGCTGTTGGGTTTGGTCCAATTCTAGCTAAGTTCAATTCAAAGAATGTTGAGTATTCTATTAGAGCTTTCCCTCTAGGTGGATTTGTTGGGTTCCCTGATAATGATCCTGAAAGTGATATCCCTGTTGATGATGAGAATTTGCTTAAGAACAGGCCAATTTTGGATAGGGTTCTTGTTGTTTCAGCTGGTGTTATTGCCAACATAGTGTTTGCAATTGCTATAATCTTTGTTCAAGTTCTCACTGTTGGTTTGCCTGTTCAAGAGGTTTTCCCTGGTGTTATGGTTCCTGATGTGAAACCCTTTTCAGCTGCTTCTAGAGATGGATTGCTTCCTGGTGATTTGATTCTTCAGGTTAATGGTAGTGAGTTTCCAAAACCGGGTCCTAGTTCTGTTACTAAGGTTGTTGATGTTATCAAGAAGAACCCCAAGAGATATGTTTTGCTTAAGGTTAAGAGGGGGATGCAGGACTTTGAAATTAGGGTCACCCCAGATGAGAATTTTGATGGGACTGGTAAAATTGGTGTTCAGTTATCACCAAATGTGAAGATTGAAAAAGTTAGGCCAAAGAATCTTGTGGAAGCTTTGAACTTTACTGGGAAAGAATTTTGGGGTCTTTCTTCTAATGTTTTAGATGGATTGAAGCAGACATTCTTGAACTTTTCACAGTCTGCTGGTAAGGTTTCAGGTCCTGTGGCGATTATTGCTGTCGGCGCTGAAGTTGCGAGGTCAAACATTGATGGTCTTTACCAATTTGCTGCCATACTCAACATTAACCTTGCTGTTATTAACCTCCTTCCCTTGCCTGCTTTGGATGGGGGTTCGTTGGCATTGATCTTTATCGAGGCGGCCAGGGGTGGGAGGAAGCTACCTTTGGAAGTGGAACAACGGATAATGTCGTCCGGAATCATGTTTGTTATACTTCTGGGGTTATTCCTCATTGTTCGCGATACCTTAAACCTTGATATTATCAAAGATATCTTGTAA 1371 0.4143 MVIYLSPSPPSHSSTSILRFSNPRTPISDSSFKPKPHFSIPLFSHSFGSNFSTLTFKQQFLNHNNSSGRFTHGNRVDFRTLAIPGFDYGNFEGPQSVLEAAAVLTAIIVVHESGHFLAASLQGIHVSKFAVGFGPILAKFNSKNVEYSIRAFPLGGFVGFPDNDPESDIPVDDENLLKNRPILDRVLVVSAGVIANIVFAIAIIFVQVLTVGLPVQEVFPGVMVPDVKPFSAASRDGLLPGDLILQVNGSEFPKPGPSSVTKVVDVIKKNPKRYVLLKVKRGMQDFEIRVTPDENFDGTGKIGVQLSPNVKIEKVRPKNLVEALNFTGKEFWGLSSNVLDGLKQTFLNFSQSAGKVSGPVAIIAVGAEVARSNIDGLYQFAAILNINLAVINLLPLPALDGGSLALIFIEAARGGRKLPLEVEQRIMSSGIMFVILLGLFLIVRDTLNLDIIKDIL* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1394 456 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 71 456 IPR004387 GO:0004222|GO:0006508|GO:0016021
Ahy13g1394 456 CDD S2P-M50_PDZ_RseP-like 97 448 - -
Ahy13g1394 456 ProSiteProfiles PDZ domain profile. 211 282 IPR001478 GO:0005515
Ahy13g1394 456 CDD PDZ_metalloprotease 209 292 - -
Ahy13g1394 456 SMART pdz_new 209 283 IPR001478 GO:0005515
Ahy13g1394 456 PANTHER MEMBRANE METALLOPROTEASE ARASP2, CHLOROPLASTIC-RELATED 71 456 - -
Ahy13g1394 456 TIGRFAM TIGR00054: RIP metalloprotease RseP 223 449 IPR004387 GO:0004222|GO:0006508|GO:0016021
Ahy13g1394 456 SUPERFAMILY PDZ domain-like 181 282 IPR036034 GO:0005515
Ahy13g1394 456 Pfam Peptidase family M50 101 437 IPR008915 GO:0004222|GO:0006508
Ahy13g1394 456 Pfam PDZ domain 224 281 IPR041489 -
Ahy13g1394 456 Gene3D - 214 307 IPR036034 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1394 Ahy-Chr13 17480182 17482088 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1394 - - lang:109351773 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g1394 13 17480182 17482088 Ahy13g1394 13 17480182 17482088 ECH