Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1300 ATGGAAGACATTGAAGATTTGCTTATTGGAACCGCAACCGGAACTCCACCGGGATTCCGGTTGCCGCTGGCTGCTTCTGTTGCAACAAAGACCAACTCCAATAGAAGGAATCCGAATCAGAAGCAAAGGACGCAACTCTCTACTGCAACTCCGTCTCCAATCCCTGGCACTCAGACTATCTACATCAAGACCTTCGGATGCTCCCACAACCAGAGCGACAGTGAATACATGGCTGGTCAGCTATCTGCTTTTGGCTATTCCTTCTCTGATAATCCCGATCAAGCAGATCTCTGGCTCATCAACACTTGTACGGTAAAGTCTCCAAGCCAATCTGCTATGGATACCATTATAGCCAAAGGAAAATCTTCAAACAAGCCGCTTGTTGTTGCGGGATGTGTCCCTCAGGGAAATCGAGGCTTGAAAGAGCTTGAGGGGATCAGCATTGTCGGGGTCCAGCAAATTGATCGCGTCGTTGAAGTTGTGGAGGAGACCTTAAAAGGTCATGAAGTCAGGCTCTTGACCCGCAAGACTTTGCCAGCACTTGACCTCCCTAAGGTTAGAAAGAACAATTTTGTTGAGATTCTTCCTATTAATGTTGGTTGTTTAGGTGCTTGCACTTATTGCAAGACAAAGCATGCTCGGGGTCACCTAGGTAGTTACACTATAGACAGCCTTGTAGGGCGTGTAAAATCCGTCATAGCTGATGGAGTTAGAGAGATCTGGCTGAGCAGTGAAGACACTGGAGCATATGGTCGTGATATTGGTGTCAATCTTCCAACTTTATTGAATGCTTTAGTAGCAGAACTCCCACCTGACGCAAGCACAATGTTACGTATTGGAATGACCAATCCACCCTTTATCCTTGAGCACTTGAAAGAGATAGCAGAGACTTTGCGGCATCCATGTGTGTACTCATTTTTGCATGTACCAGTTCAGTCTGGAAGTGATGCTGTTCTGACGGCAATGAATCGAGAATATACTGTGGGTGAGTTCAGGACTGTTGTAGATACCTTAATGGAGTTGGTGCCAGGGATGCAGATTGCCACTGACATAATATGTGGATTTCCTGGTGAAACTGATGAAGATTTTGAACAAACTGTTAACCTTGTTAAAGAGTACAAATTCCCTCAAGTTCATATTTCACAATTTTATCCTCGACCAGGGACCCCGGCTGCAAGGATGAAAAAGGTTCCAAGTAATGTGGTGAAGAGTAGAAGCCGTGAACTTACAAATGTCTTTGAAGCCTTCACACCATATACCGGGATGGAAGGCAAAGTGGAGAGAATTTGGATTTCTGACATTGCATCAGATGGAGTTCACTTGGTTGGTCATACGAAGGGATATATACAAGTTCTTGTAATTGCTCCAGACCATATGCTAGGTACTTCAGCTATTGTTAAGATAACATCCTGTGGAAGGTGGTCAGTTTTTGGGGAAGTAATCGACACGCTCAACCTCAACCAAGTGAGGACTAATAAAGCTTCAAGCAAGGAGACTCCTAATCAAGATGCGCCTTCTCTATGCTGTAGCCCAGCCAGTGTTGGATCCTCCTTGCAAGAACCAGAATCTTGTGCTTGTGGAAACGATAGCTGCTGTGCTAAGAGTACTCACGCGAATAGTGATAACACGAGTAGCGATGTGGTGCCACAAAATCAGAACGGTAGAAATTTCATTGGGTGGGTACTGAGGAAGCGGAAGCATTTGCTCCACAAAAGGTTTGACAGCAGTGAGTTAGGTTCTGTTAAAAAGGAACATGGAAGCTCGAGGAAGTGGGACTTTATTGATAAGGCTCTTTTGGGTGGAATATCGTTTAGCATCTTCATTATTGCTGTAGTAGTAGTTGCCTTTAGTTTTAGGATATGGTCCCAATAA 1872 0.4471 MEDIEDLLIGTATGTPPGFRLPLAASVATKTNSNRRNPNQKQRTQLSTATPSPIPGTQTIYIKTFGCSHNQSDSEYMAGQLSAFGYSFSDNPDQADLWLINTCTVKSPSQSAMDTIIAKGKSSNKPLVVAGCVPQGNRGLKELEGISIVGVQQIDRVVEVVEETLKGHEVRLLTRKTLPALDLPKVRKNNFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSVIADGVREIWLSSEDTGAYGRDIGVNLPTLLNALVAELPPDASTMLRIGMTNPPFILEHLKEIAETLRHPCVYSFLHVPVQSGSDAVLTAMNREYTVGEFRTVVDTLMELVPGMQIATDIICGFPGETDEDFEQTVNLVKEYKFPQVHISQFYPRPGTPAARMKKVPSNVVKSRSRELTNVFEAFTPYTGMEGKVERIWISDIASDGVHLVGHTKGYIQVLVIAPDHMLGTSAIVKITSCGRWSVFGEVIDTLNLNQVRTNKASSKETPNQDAPSLCCSPASVGSSLQEPESCACGNDSCCAKSTHANSDNTSSDVVPQNQNGRNFIGWVLRKRKHLLHKRFDSSELGSVKKEHGSSRKWDFIDKALLGGISFSIFIIAVVVVAFSFRIWSQ* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1300 623 TIGRFAM MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type 60 481 IPR006466 GO:0035598|GO:0035600
Ahy13g1300 623 Gene3D tm_1862 like domain 189 419 IPR023404 -
Ahy13g1300 623 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 58 166 IPR013848 GO:0035596|GO:0051539
Ahy13g1300 623 SUPERFAMILY Radical SAM enzymes 181 415 - -
Ahy13g1300 623 SMART MiaB 191 415 IPR006638 GO:0003824|GO:0051536
Ahy13g1300 623 ProSiteProfiles Radical SAM core domain profile. 187 419 IPR007197 GO:0003824|GO:0051536
Ahy13g1300 623 ProSiteProfiles TRAM domain profile. 420 482 IPR002792 -
Ahy13g1300 623 CDD Radical_SAM 195 399 - -
Ahy13g1300 623 PANTHER RADICAL SAM PROTEINS 1 512 - -
Ahy13g1300 623 MobiDBLite consensus disorder prediction 28 55 - -
Ahy13g1300 623 SFLD Radical SAM 135 422 IPR007197 GO:0003824|GO:0051536
Ahy13g1300 623 Gene3D - 59 178 IPR038135 -
Ahy13g1300 623 SFLD B12-binding domain containing 135 422 - -
Ahy13g1300 623 Pfam Radical SAM superfamily 198 370 IPR007197 GO:0003824|GO:0051536
Ahy13g1300 623 Pfam Uncharacterized protein family UPF0004 60 137 IPR013848 GO:0035596|GO:0051539
Ahy13g1300 623 ProSitePatterns Methylthiotransferase radical SAM domain signature. 195 215 IPR020612 GO:0051539
Ahy13g1300 623 TIGRFAM TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 59 476 IPR005839 GO:0006400|GO:0016740|GO:0051539
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1300 Ahy-Chr13 15479674 15484142 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1300 K15865 - gmx:100798865 964.14