Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1199 ATGAACGCCCCTGACCGTTACGAACGCTTTGTCGTCCCCGAAGGCACCAAAAAGGTGTCGTATGAGAGGGACACGAAGATCATCAATGCCGCCTCTGTCACTATCGAGAGAGAGGAACACACTATTGGCAATATTATTCGCATGCAGCTGCATCGAGACGAAAACGTGTTGTTTGCTGGATACAAGCTGCCTCACCCTCTCCAGTACAAAATTATTGTGAGGATACATACCACTGGCCGGTCAGACCCAATGCAGGCATATAACCAGGCTATTAATGATCTGGACAGGGAACTTGATCACTTGAAGAAGTCATTTGAGGACGAGATGGTGAAGTTTTCAAGGGACTATTAA 351 0.4701 MNAPDRYERFVVPEGTKKVSYERDTKIINAASVTIEREEHTIGNIIRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTGRSDPMQAYNQAINDLDRELDHLKKSFEDEMVKFSRDY* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1199 116 CDD RNAP_II_RPB11 13 105 IPR037685 GO:0001055|GO:0005665|GO:0006366
Ahy13g1199 116 SUPERFAMILY RBP11-like subunits of RNA polymerase 1 112 IPR036603 GO:0006351|GO:0046983
Ahy13g1199 116 Coils Coil 84 111 - -
Ahy13g1199 116 ProSitePatterns RNA polymerases L / 13 to 16 Kd subunits signature. 35 66 IPR008193 GO:0003677|GO:0003899|GO:0006351
Ahy13g1199 116 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 31 103 IPR009025 GO:0006351|GO:0046983
Ahy13g1199 116 PANTHER DNA-DIRECTED RNA POLYMERASE I,II,III 1 111 - -
Ahy13g1199 116 PANTHER DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 1 111 - -
Ahy13g1199 116 Gene3D - 1 114 IPR036603 GO:0006351|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1199 Ahy-Chr13 13781010 13783220 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1199 K03008 - csv:101216683 218.009