Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1143 ATGGATGGTTACGAAGCAACTAGGATAGTGTTCTCAAGGATCCAAAGCATGGACCCTGAAAACGCTTCAAAAATCATGGGTCTTCTTCTGATTCAAGACCATGGTGAGAAGGAGATGATTAGGTTAGCATTTGGACCAGAAGCTTTACTTCACTCTGTGATTTCCAAAGCTAGAAAAGACTTAGGTTTACCTTCAAACTCTCCTCCTACACCTTCAACTCCACCATCTCCATCACCTTTTCTTTCAGCTTCTACCAACCCGGTTAACATTTCAAGGCAGAACTCAACTTCTTCTTCTTCAAGGCTTGGTAGTGGGATGAACCTTCCACCTGCTCTAACCATACCAAACCCTTCTTCTTCTTCTTCAGCTTCTTGGGCTGCCATGTCTGACCTTCAAAACCCTGAGGACTTGATGAGTCCTAACAACTTGGTTGTTGGTTCTTCTTCCACAACTTCATCTTCTCTACCCTTTTATGCAAATGGAGGGTCAGATCCAATTGATGAGTACCAGTTACAGGACCAGCTTTCATTCTTGAATGATGGTTCTCCAAATTCTACTCTTGCTGCGGCTGCTTGTGGTGGTTCACACCATAACAAGAGCCATGATTTGTTCTACCCTCACTCAGACATGGCTTCTAGTCCTACTGGTGCTGGTGACCCCTCTTTGTTCCCTTCTTATGGCTGGGGAGGGCCTCTTCATAGGAGAAGTTGTTCAGTGAATGATGCTTGTTTGGCTTCGGAGGATCCCAATTCCGGGTTTGGTTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTACTGCAAGAATGGCACTAGCTGCAGGTTCCTCCATGGTGGTGGACTTGGAGAAGCTGATGGTGCTGCTGCTGCTGCAATGGTTGGTTCTCCAAGCAAGATTGAGATGATGGAGCAGTGTCATGAACTTCTCAGATCTAAAACTGCTCAGCAACAAAGACTTCAACTCATGGCATCTTCAAGCTTTCCTTACTCTTCAAAGTGCATGAATTTCCTCTTACAACAACAGCAGCAGCAGCAGCAAAATGATACTCAAAGGGCTGCGGCTGCGGCTTTGATGATGAGCGAGGACTTACACAAATTCGGAAGATCGAGGCTTGAAAGGAGTGATTTCTCTTTGAACAGCCCTGGCATGGTCAACCCAGCTTCCAGGCAGATCTATTTGACTTTCCCAGCTGACAGCACTTTCAGAGAGGAAGATGTTTCCAACTACTTCAGCATTTATGGGCCAGTTCAAGATGTGAGAATCCCATACCAGCAGAAGCGCATGTTCGGATTTGTTACATTCGTTTATCCGGAGACTGTGAAGCTCATTCTCTCAAAAGGGAACCCTCATTTTGTGTGTGATGCAAGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTTCCAGACAAGAAGCAACAGCAACAGGTAGATAGGGATTTTTCACCTTGTGGCACTCCTACTGGACTAGATGCTAGAGACCAATATGATCTCCAACTAGGAGGGAGAATGTTCTACAACACTCAAGACATGCTTTGGAGGAGGAAGATGGAGGAGCAGGCTGATTTGCAGCAAGCTCTTGAGCTCCAAAGTAGGAGGTTGATGGGTCTGCAGCTCCTTGACATCAAGAAGCAGCACCATCATCGCGCCCTCTCCGCCGGAAGTCCGATACCATCCCCAACACACTCTCCTAACATGTTCAACCAAACCCTTGTTCATCATTCGTTTCACGGCACCCCGGATTCGCCGGAGGAGAATGGATCAGCTTCTGCTCCAAGTAGCACGGCACCGGTTTCGGTTATTGGTCAACAGACAGTCAACATATCTGTTGGCAAGGAAGTTGGAACCAATAATGGAGAGAATGGATATAGTGAAGGCAATGGCAATGGCAAGCAAAGTTCAAGTCATGAAGACAGTGATCTACAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCACCTACAAAAGCTGCTGTTGGAGATTACATGGCTGCCTTCAACAATGGACCTAATGAGGCCATTGATGCAGATCCCTCAGCTTCTTCTGCCAACTCCAAATTTGGAACTAGCTCTCTACTTCCATCAGCATCTGCTCTTGACATGGGTTCATTCAAATCCTTTAACTGCCAAATACCTAGGTTCTCTTCTGGCCATGGAACTATTGGGATGTTAGCCGGGACCGGCGGCGCCATCGGCATTTAG 2208 0.466 MDGYEATRIVFSRIQSMDPENASKIMGLLLIQDHGEKEMIRLAFGPEALLHSVISKARKDLGLPSNSPPTPSTPPSPSPFLSASTNPVNISRQNSTSSSSRLGSGMNLPPALTIPNPSSSSSASWAAMSDLQNPEDLMSPNNLVVGSSSTTSSSLPFYANGGSDPIDEYQLQDQLSFLNDGSPNSTLAAAACGGSHHNKSHDLFYPHSDMASSPTGAGDPSLFPSYGWGGPLHRRSCSVNDACLASEDPNSGFGWKPCLYFARGYCKNGTSCRFLHGGGLGEADGAAAAAMVGSPSKIEMMEQCHELLRSKTAQQQRLQLMASSSFPYSSKCMNFLLQQQQQQQQNDTQRAAAAALMMSEDLHKFGRSRLERSDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQQQVDRDFSPCGTPTGLDARDQYDLQLGGRMFYNTQDMLWRRKMEEQADLQQALELQSRRLMGLQLLDIKKQHHHRALSAGSPIPSPTHSPNMFNQTLVHHSFHGTPDSPEENGSASAPSSTAPVSVIGQQTVNISVGKEVGTNNGENGYSEGNGNGKQSSSHEDSDLQECLEHNLPDSPFASPTKAAVGDYMAAFNNGPNEAIDADPSASSANSKFGTSSLLPSASALDMGSFKSFNCQIPRFSSGHGTIGMLAGTGGAIGI* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1143 735 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 723 - -
Ahy13g1143 735 SMART c3hfinal6 254 278 IPR000571 GO:0046872
Ahy13g1143 735 SUPERFAMILY CCCH zinc finger 255 277 IPR036855 GO:0046872
Ahy13g1143 735 MobiDBLite consensus disorder prediction 82 126 - -
Ahy13g1143 735 MobiDBLite consensus disorder prediction 572 640 - -
Ahy13g1143 735 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 257 277 IPR000571 GO:0046872
Ahy13g1143 735 MobiDBLite consensus disorder prediction 60 126 - -
Ahy13g1143 735 SMART rrm1_1 389 459 IPR000504 GO:0003723
Ahy13g1143 735 SUPERFAMILY RNA-binding domain, RBD 400 479 IPR035979 GO:0003676
Ahy13g1143 735 ProSiteProfiles Zinc finger C3H1-type profile. 252 279 IPR000571 GO:0046872
Ahy13g1143 735 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 400 445 IPR000504 GO:0003723
Ahy13g1143 735 MobiDBLite consensus disorder prediction 572 634 - -
Ahy13g1143 735 MobiDBLite consensus disorder prediction 67 81 - -
Ahy13g1143 735 Gene3D - 331 480 IPR012677 -
Ahy13g1143 735 MobiDBLite consensus disorder prediction 465 487 - -
Ahy13g1143 735 Gene3D - 245 330 - -
Ahy13g1143 735 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 723 - -
Ahy13g1143 735 CDD RRM_AtC3H46_like 390 459 IPR034365 -
Ahy13g1143 735 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 388 464 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1143 Ahy-Chr13 12902835 12907243 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1143 - - adu:107477482 1335.47