Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1121 ATGGCTACTGCAGCAGTTATTGGACTCAGTGGAGGCAAGAGGATTTTGAGTTCATCATACCATTACTCTGATGTTACCGAAAAGCTTTCATTTGGCACTGATTTTGGATCCACACACTATCAGATTGTTCCAACAAAGTCTGTAATAATTGCTAAGAAGCCATCCAATTACACCCCGACCTTTGCAGCATCGAATCGCCAAAACCAGTCCATCAAGGCTCTTCAGGAACATGTTGATGCCGAGGCAGCCGGTACTTCAGATCCATTGTGGTTTCAAGGATTCAGTTCCAGTGACTTAGAGTTGGAAAGCTCTGAAATGGGTTATTCTGTGGAGGCTCTTCTTTTGCTGCAGAAGTCAATGCTGGAAAAGCAGTGGAACCTTTCTTTTGAGAGGGATGTGCTAAACGAGCATTCGAGAATGGATAAAAGCCGAAGGAAGGTGGCAGTAACTTGTTCTGGGGTGTCTGCAAGACAGAGAAGAATGAACACCAAGAGGAAGGCCTCGGGTAAAACCAGCGCAACGATCGAACCTTGTACTGCTATGCAGCTGAGGTCTGCCATCAGTCCAGAGCTGCTTCAATATCGTTTGAAGGGCTATGTGAAAGGAGTAGTGAGTGAGCAATTGCTCTCTCATGCTGAAGTTGTAAACCTTTCAGAGAAAATAAAAGCTGGACTTTCCTTAGAGGAGCATAAATCCAGAATGAAGGACAAACTAGGATGTGAGCCCTCTGATGATCAAATTGCAGCGTCATTGAAGATTTCTCGGGCTGCACTACGAGCAAAAATGATAGAGTGCTCTTTGGCAAGAGAAAAGTTGGCTATGAGCAATGTTCGCTTAGTTTTGTCTATTGCTCAAAGATATGATAACATGGGAGCCGAAATGGATGACCTTGTTCAGGGTGGTTTGATTGGACTTCTTCGTGGGATCGAGAAGTTTGATTCTTCAAAGGGGTTTAAGATTTCAACTTATGTTTATTGGTGGATACGTCAGGGTGTTTCAAGAGCCTTAGTTGAAAATTCAAGAACACTTAGATTGCCCACTCATATACACGAAAGATTATCTTTAATCCGCAATGCAAAGTTTAGACTGGAAGAAAAAGGAGTTACTCCAACTGTGGAAAGGATAGCAAAATGTCTTAATATGTCTCAAAAGAAAGTCAGAAATGCCACTGAGGCAATGAGTAAAATTTTCTCGCTTGATAGGGAGGCGTTTCCATCTTTGAATGGTCTTCCAGGAGAAACTCATCATAGTTATATTGCTGATACTCGCGAAGAGAACATCCCGTGGAATAGAGTAGATGAATGGGCACTAAAGGACGAAGTGAATAAACTCCTTAATGTGACCCTTGTGGAAAGAGAGAGAGAAATCATTCGACTCTATTACGGATTGGATAGAGAATCTCTTACATGGGAGGATATTAGTAAACGGATAGGGTTGTCAAGAGAAAGAGTAAGACAAGTTGGACTTGTTGCATTGGAGAAACTAAAACATGCTGCAAGGAAGGGAGGGATGGAAGCCATGCTTTTGAAACATTAG 1536 0.4245 MATAAVIGLSGGKRILSSSYHYSDVTEKLSFGTDFGSTHYQIVPTKSVIIAKKPSNYTPTFAASNRQNQSIKALQEHVDAEAAGTSDPLWFQGFSSSDLELESSEMGYSVEALLLLQKSMLEKQWNLSFERDVLNEHSRMDKSRRKVAVTCSGVSARQRRMNTKRKASGKTSATIEPCTAMQLRSAISPELLQYRLKGYVKGVVSEQLLSHAEVVNLSEKIKAGLSLEEHKSRMKDKLGCEPSDDQIAASLKISRAALRAKMIECSLAREKLAMSNVRLVLSIAQRYDNMGAEMDDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHIHERLSLIRNAKFRLEEKGVTPTVERIAKCLNMSQKKVRNATEAMSKIFSLDREAFPSLNGLPGETHHSYIADTREENIPWNRVDEWALKDEVNKLLNVTLVEREREIIRLYYGLDRESLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKGGMEAMLLKH* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1121 511 Gene3D - 343 394 IPR036388 -
Ahy13g1121 511 PANTHER RNA POLYMERASE SIGMA FACTOR SIGA 1 511 - -
Ahy13g1121 511 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 268 498 IPR014284 GO:0003700|GO:0006352|GO:0006355
Ahy13g1121 511 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 344 400 IPR013324 -
Ahy13g1121 511 CDD Sigma70_r4 438 496 - -
Ahy13g1121 511 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 196 342 IPR013325 GO:0003700|GO:0006352|GO:0006355
Ahy13g1121 511 Gene3D RNA Polymerase Primary Sigma Factor 57 342 - -
Ahy13g1121 511 Pfam Sigma-70 region 3 351 425 IPR007624 GO:0003700|GO:0006352|GO:0006355
Ahy13g1121 511 Gene3D - 427 504 IPR036388 -
Ahy13g1121 511 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 1 511 - -
Ahy13g1121 511 Pfam Sigma-70 region 2 274 341 IPR007627 GO:0003700|GO:0006352|GO:0006355
Ahy13g1121 511 Pfam Sigma-70, region 4 448 497 IPR007630 GO:0003700|GO:0006352|GO:0006355
Ahy13g1121 511 ProSitePatterns Sigma-70 factors family signature 1. 296 309 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy13g1121 511 PRINTS Major sigma-70 factor signature 449 461 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy13g1121 511 PRINTS Major sigma-70 factor signature 296 309 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy13g1121 511 PRINTS Major sigma-70 factor signature 320 328 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy13g1121 511 PRINTS Major sigma-70 factor signature 484 495 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy13g1121 511 PRINTS Major sigma-70 factor signature 469 484 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy13g1121 511 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 425 501 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1121 Ahy-Chr13 12628205 12633259 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1121 K03086 - gmx:100801884 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g1121 13 12628205 12633259 Ahy13g1121 13 12628205 12633259 ECH