Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1080 ATGGCGACAAGAACGGTTAAAGTGAGCAACATCTCTTCAGGCGCAAGAGAGCAAGATTTGAAGGAATTTCTGACATATCCTGGAAAAATAGAACATATAGAAATGAAGAGTGAGAATAATTCCAAAGTTGCATATGTTACCTTCAATAGTTCAGATGGAGCAGAAACTGCAGTTCTTCTATCGGGAGCTGTGTTGGTTGGACAAGCTATAACCATAGTTTTGGCTACAGATTATGTTGCACCTGCCTCGGCTGCATCTACAATCCCAACTGCAACAGGAACCACAAATGCAGATGCTGTGACTTCTGAATCTGGTTTGTTAACAGCCGAGGATGTCGTGAGTAGCATGCTGGCCAAGGGCTACATTTTGGGCCAAGACGTATTAAACCGCGCAAAGTCATTCGATGAGAGGCACCAGCTTACTTCTACTGCCTCGTCGAAAGTTGCTACATTGGACCAGAAGGTTGGTATCAGTGAAAAAATCACTGCTGGCTCGATGCTGGTGAATGATAAGGTCAAGGAAATGGATGAGAGGTATCAAGTATCCGAGAAGGCTAAGTCTGCCATGTCAGCGGCAGAGCAGTCGCTGAGCACTGCCGGATCAACTCTCATGAAGAACCGTTATGTGTTAACCGGGACAACATGGGTGACTGGTGCATATAGCAAGGTTGCTAAGGCTGCTGAGGAAGTGGGACAGAAAACTATGGAGAAGGTTTTAGCACAAGAAAATCAAGAAAACAGTACAGAAGTCAATAAAGATGTTCACAACAGCACAACCACCACCACCACCACCACCATGCCTGAACCTCAACATGTTGCCAACACAGCTGTTCAACCTCCTAGAAATGAACCACCACAACAGGCAACAACAGCCAATCACCCTTCTAACCCTTCCACAACTCAAGGCTTGAACCCCTGA 918 0.4586 MATRTVKVSNISSGAREQDLKEFLTYPGKIEHIEMKSENNSKVAYVTFNSSDGAETAVLLSGAVLVGQAITIVLATDYVAPASAASTIPTATGTTNADAVTSESGLLTAEDVVSSMLAKGYILGQDVLNRAKSFDERHQLTSTASSKVATLDQKVGISEKITAGSMLVNDKVKEMDERYQVSEKAKSAMSAAEQSLSTAGSTLMKNRYVLTGTTWVTGAYSKVAKAAEEVGQKTMEKVLAQENQENSTEVNKDVHNSTTTTTTTTMPEPQHVANTAVQPPRNEPPQQATTANHPSNPSTTQGLNP* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1080 305 Gene3D - 1 73 IPR012677 -
Ahy13g1080 305 SMART rrm1_1 5 73 IPR000504 GO:0003723
Ahy13g1080 305 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 260 - -
Ahy13g1080 305 PANTHER BINDING PARTNER OF ACD11 1 1 260 - -
Ahy13g1080 305 MobiDBLite consensus disorder prediction 242 305 - -
Ahy13g1080 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 70 IPR000504 GO:0003723
Ahy13g1080 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 77 IPR000504 GO:0003723
Ahy13g1080 305 SUPERFAMILY RNA-binding domain, RBD 3 78 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1080 Ahy-Chr13 12200492 12202575 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1080 - - gmx:100784398 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g1080 13 12200492 12202575 Ahy13g1080 13 12200492 12202575 ECH