Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0953 ATGAATATCACGCTTCCACGGAGGGTTCTCCTCAACAACCACTCTTTCCTGCGAACATTCTCATCGTCCCCATTATCCAAACTCGAAGACCAAAACGACACTCGTTTTGTCTCACTCCTCTCCGACATCGTCCGAGGAAACCAGAGCTGGAAACTTGCCTTCAACGACCCTTCTATTTCCTCCACATTGAGGCCCCACCATGTTGAACAGCTCTTGATCCGAACCCTCGACGATTCCAAGTTAGCTTTGAGGTTCTTCAACTTCCTCGGTTTGCACAAGAGCTTCAACCATTCCACAACATCCTTTGCCATCTTGGTTCATGCTCTTGTTCATCAGAAGCTCTTCTGGCCCGCCAATTCGCTCTTGCACACTCTTCTCTTACGTGGGTCGGAACCAAAATTCGTTTTTTCATGCTTCTTGGATTCTCATCGCAAATGTAAGTTTTTGTCAAATTTGGGTTTTGATTTGTTGGTTCAGAGTTACTTGCAAAATAGAAGGGTTTTAGATGCTGTGGTGGTTGCAAAGCTCATGCTTGAAAACAAGTTGTTGCCTGAAGTTAGAACACTGAGTGCGCTTTTGAATGGTTTATTGAGAATTAGAAGGTTTATAATGGTTTTGGAATTGTTTGATGAGTCGGTGAATGTGGGTGTTCGACCGGATTCTTATACTTGTTCGGCTGTCATTCGGAGCTTGTGTGATTTGAAGGATTTTTCCAAGGCTAAGGAGAAGGTTTGGTGGATGGAAGTGAATAAGTTTGATCTGAGTATCGTAACTTATAATGTCTTAATTCATGGGCTATGCAAGGGTGATCGCGTTTCGGAAGCTGTTGAGGTTAAAAGATCATTGAGTGAAAAGGGTCTAAAAGCAGATTTGGTTACATACTGCACCCTAGTTCTTGGTTTTTGTAGGGTACAACAATTTGAAGCTGGATTGCAGCTTTTTAATGAAATGATTGAATTGGGGTTTGTTCCGAGTGAAGCTGTTGTATCAGGGCTAGTGGATGGGTTAAGAAAGCAAGGAAAGGTTGATGATGCTTATAATTTGGTTGTTCAGGTAAGCAGATTTGGTTTTCTGCCAAATTTGTTTGTTTGTAATGCATTAATCAACGCTTTGTGCAAACGAGGAGATTTGGATAAATCAGAGTTGCTTTATAATAATATGTGTTTGGTGAACTTGCATCCCAACGATATTACTTATTCTATTCTGATTGATTCCTTTTGCAGAAGGGGGAGGTTGGATGTCGCGATATCTTATTTTGATAGAATGATAGAGGCTGGCGTAGCAGAAACTGTATATGCATACAACTCTATGATAAATGGCCAATGCATGTTTGGACATTTGAGTGCCGCCGAGTCTTTGTTCGCTCGGATGATCAATAATGGTTTGGAGCCTACTGCGACAACCTTTACGCCGTTGATTAGTAGATATTGCAAAGATCTACAACTACGAAAAGCATTCCAACTGTATGATATGATGATTGAAAAAGGAATTGCCCCAAATGTGTATACCTTCACTGCGCTTATTTCTGGGTTTTGCAGTGCAAATAATATGACTGAAGCATTCAAACTTTTTGTTGAAATGGTGGAAAAAAAAATCACCCCAAATGAGGTAACATATAATGTTATGATTGAAGGGTATTGTAGGAATGGTAAAATTGACAAGGCCTTTGAATTACTTGATGAGATGCTTCAGAAAGGCCTTGTTCCGGACACATATACCTACAGACCTCTTATCAGTGGCCTTTGTTCTGCTGGCAGGGTTTCAGATGCTAAAAATTTTGTTGATGTTCTACACAAACAGGACCGTAAATTAAACGAGATGTGCTATAGTGCACTTCTACATGGTTATTGCAAAGAAGGAAGATTGGTGGAGGCATTGAGCGCTGCTTCTGAGATGATTCAAAGAGGAATCAATGTAGATTTGGTTTGCCATGCTGTTCTCATCGACGGTTCACTGAAGCAACTAGATAGGAAAACACTATTTGGTCTCTTAAAACAGATGCAGGATCAAGGATTGAAACCTGATAATGTAATATATACAAGTATGATCGATGCATTCAGCAAAGAAGGATCTTTCGAGAAGGCTTTCCAGTGTTGGGATTTGATGCTTACGGAGGAATGCTTTCCCAATGTTGTAACGTATACTGCTTTGATGAATGGTCTATGCAAGGCGGGTGAAATGGACAGAGCAGGTCTTCTCTTTAAAAAAATGATGGCTGCAAATGTCCCTCCAAATTCAATCACATATGGCTGTTTTCTTGATCGTCTTACCAGCGAAGGGCATATGGAGGAAGCTATGGGTCTCCACCATGCAATGCTTAAAGGGCTTTTGGCGAACACTGTAACATACAACATCCTTATTCGTGGCTTCTGCAAGTTAGGTAGATTTAACGAAGCCAGCAAGGTGCTTTCTGAAATGACCGAAAATGGCATTTTCCCCGACTGTATTACCTATTCAACTTTAATTTATGAGTACTGCAGAAGTGGCAACGTAGGAGAAGCAGTCAGATTGTGGGATACCATGCTAAACAAAGGTCTTGAGCCGGACTTGGTTGCATATAACTTGTTACTATATGGTTGTTGTATTAATGGAGAGCTCAACAAAGCATTTGAGTTGCGCGATGACTTGCTGAGGAGAGGGGTGAAGCCAAGGCAAAATTTTCGAGTACTGCACAAGGGACAATGTAGGAGCAGTGGTTAA 2700 0.4119 MNITLPRRVLLNNHSFLRTFSSSPLSKLEDQNDTRFVSLLSDIVRGNQSWKLAFNDPSISSTLRPHHVEQLLIRTLDDSKLALRFFNFLGLHKSFNHSTTSFAILVHALVHQKLFWPANSLLHTLLLRGSEPKFVFSCFLDSHRKCKFLSNLGFDLLVQSYLQNRRVLDAVVVAKLMLENKLLPEVRTLSALLNGLLRIRRFIMVLELFDESVNVGVRPDSYTCSAVIRSLCDLKDFSKAKEKVWWMEVNKFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLSEKGLKADLVTYCTLVLGFCRVQQFEAGLQLFNEMIELGFVPSEAVVSGLVDGLRKQGKVDDAYNLVVQVSRFGFLPNLFVCNALINALCKRGDLDKSELLYNNMCLVNLHPNDITYSILIDSFCRRGRLDVAISYFDRMIEAGVAETVYAYNSMINGQCMFGHLSAAESLFARMINNGLEPTATTFTPLISRYCKDLQLRKAFQLYDMMIEKGIAPNVYTFTALISGFCSANNMTEAFKLFVEMVEKKITPNEVTYNVMIEGYCRNGKIDKAFELLDEMLQKGLVPDTYTYRPLISGLCSAGRVSDAKNFVDVLHKQDRKLNEMCYSALLHGYCKEGRLVEALSAASEMIQRGINVDLVCHAVLIDGSLKQLDRKTLFGLLKQMQDQGLKPDNVIYTSMIDAFSKEGSFEKAFQCWDLMLTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKKMMAANVPPNSITYGCFLDRLTSEGHMEEAMGLHHAMLKGLLANTVTYNILIRGFCKLGRFNEASKVLSEMTENGIFPDCITYSTLIYEYCRSGNVGEAVRLWDTMLNKGLEPDLVAYNLLLYGCCINGELNKAFELRDDLLRRGVKPRQNFRVLHKGQCRSSG* 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0953 899 TIGRFAM PPR: pentatricopeptide repeat domain 432 465 IPR002885 -
Ahy13g0953 899 TIGRFAM PPR: pentatricopeptide repeat domain 537 571 IPR002885 -
Ahy13g0953 899 TIGRFAM PPR: pentatricopeptide repeat domain 608 640 IPR002885 -
Ahy13g0953 899 TIGRFAM PPR: pentatricopeptide repeat domain 572 605 IPR002885 -
Ahy13g0953 899 TIGRFAM PPR: pentatricopeptide repeat domain 816 849 IPR002885 -
Ahy13g0953 899 TIGRFAM PPR: pentatricopeptide repeat domain 851 883 IPR002885 -
Ahy13g0953 899 TIGRFAM PPR: pentatricopeptide repeat domain 781 815 IPR002885 -
Ahy13g0953 899 TIGRFAM PPR: pentatricopeptide repeat domain 502 536 IPR002885 -
Ahy13g0953 899 TIGRFAM PPR: pentatricopeptide repeat domain 363 395 IPR002885 -
Ahy13g0953 899 TIGRFAM PPR: pentatricopeptide repeat domain 292 326 IPR002885 -
Ahy13g0953 899 TIGRFAM PPR: pentatricopeptide repeat domain 397 427 IPR002885 -
Ahy13g0953 899 TIGRFAM PPR: pentatricopeptide repeat domain 257 290 IPR002885 -
Ahy13g0953 899 TIGRFAM PPR: pentatricopeptide repeat domain 677 711 IPR002885 -
Ahy13g0953 899 TIGRFAM PPR: pentatricopeptide repeat domain 468 501 IPR002885 -
Ahy13g0953 899 TIGRFAM PPR: pentatricopeptide repeat domain 712 745 IPR002885 -
Ahy13g0953 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Ahy13g0953 899 Gene3D Tetratricopeptide repeat domain 425 514 IPR011990 GO:0005515
Ahy13g0953 899 Gene3D Tetratricopeptide repeat domain 656 758 IPR011990 GO:0005515
Ahy13g0953 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 570 604 IPR002885 -
Ahy13g0953 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 814 848 IPR002885 -
Ahy13g0953 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Ahy13g0953 899 Gene3D Tetratricopeptide repeat domain 58 245 IPR011990 GO:0005515
Ahy13g0953 899 Pfam PPR repeat family 255 303 IPR002885 -
Ahy13g0953 899 Pfam PPR repeat family 468 513 IPR002885 -
Ahy13g0953 899 Pfam PPR repeat family 674 723 IPR002885 -
Ahy13g0953 899 Pfam PPR repeat family 779 827 IPR002885 -
Ahy13g0953 899 Pfam PPR repeat family 359 408 IPR002885 -
Ahy13g0953 899 Pfam PPR repeat family 534 583 IPR002885 -
Ahy13g0953 899 Gene3D Tetratricopeptide repeat domain 353 424 IPR011990 GO:0005515
Ahy13g0953 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Ahy13g0953 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Ahy13g0953 899 SUPERFAMILY TPR-like 294 590 IPR011990 GO:0005515
Ahy13g0953 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 535 569 IPR002885 -
Ahy13g0953 899 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 285 496 - -
Ahy13g0953 899 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 464 774 - -
Ahy13g0953 899 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 661 883 - -
Ahy13g0953 899 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 71 387 - -
Ahy13g0953 899 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 386 653 - -
Ahy13g0953 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 605 639 IPR002885 -
Ahy13g0953 899 Pfam PPR repeat 603 632 IPR002885 -
Ahy13g0953 899 Pfam PPR repeat 844 874 IPR002885 -
Ahy13g0953 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Ahy13g0953 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Ahy13g0953 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 500 534 IPR002885 -
Ahy13g0953 899 Pfam PPR repeat 747 774 IPR002885 -
Ahy13g0953 899 Pfam PPR repeat 433 462 IPR002885 -
Ahy13g0953 899 Gene3D Tetratricopeptide repeat domain 246 352 IPR011990 GO:0005515
Ahy13g0953 899 Gene3D Tetratricopeptide repeat domain 759 898 IPR011990 GO:0005515
Ahy13g0953 899 Gene3D Tetratricopeptide repeat domain 515 655 IPR011990 GO:0005515
Ahy13g0953 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 710 744 IPR002885 -
Ahy13g0953 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
Ahy13g0953 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 675 709 IPR002885 -
Ahy13g0953 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 779 813 IPR002885 -
Ahy13g0953 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 849 883 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0953 Ahy-Chr13 10311242 10314841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0953 402 897 Glycosyltransferase AT1G05670 30.906 2.66e-75 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0953 - - adu:107477233 1709.89