Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0896 ATGGCAAGCCATCAAGGGAAAGTTCCTCCTTCGAATGGGTCTGTGTATGTATGCAACTTGCCTTTTGGCACTGACGAAACCATGTTGGCTGAGTATTTTGGCACCATTGGTTTGATCAAGAAAGATAAACGGACCGGGAGGCCTAAAATATGGTTATATCGAGACAAAGAGACTAATGAACCAAAGGGAGATGCCACTGTAACATATGAAGATCCACATGCAGCTGTAGCTGCTGTTGAATGGTTTAACAACAAGGATTTTCATGGTAGTACAATTGGAGTTTTTATAGCTGAGTCAAAAAACAAAGACGAGCAAGCCTATAATTCAGTGGCAGAACCGGCTGTTGCTGGTAATGTTGGTGGGCTAGAGGAAACTACTAGAGATGTTAATGGGGGTAGTGGAAGAGGTAGAGGTCAAATTGATTCTTCTGGCAAGGCTTGGCAACAAGAGGGCGATTGGTTGTGTCCGAATACCAGTTGCTCCAATGTAAATTTTGCTTTTCGTGGTGCTTGCAATCGCTGTGGAAGTGCTCGTCCAGTTGGTGCTGCTGGTGTTGCTGGGGGTGGTGGCCGTGGCAAGGGACGTGCCAGTCAAGGTCAAGAGTCAGGGGGTGTTGGCCGTCCAGTTACCGGGGGACTCTTTGGGCCGAATGACTGGCCTTGTCCAATGTGTGGTAACATCAATTGGGCGAAGCGGACTAAATGCAATATTTGCAATACAAATAAGCCTGGCCATAATGAGGGTGGTGTAAGAGGAGGGCGAGGTGGAGGTTACAAAGAGCTGGATGAAGAAGAAATTGAGGAAACTAGACGTCGTAGGCGGGAGGCTGAAGATGATGGGGAGTTGTATGATGAATTTGGAAATCTTAAGAAGAAATTCCGTGCTAAAACACAGCAGGCTGAAGCTGCAAGAGTGCTTCCTGGTTCAGGGCGTGCTGGGTGGGAGGTTGAGGACCTAGGGATTGACAGGGATTCCAGAGAAAGAAGTAGAGACAGGGTGAGAGATCGTAATGATGGGGAGAGCAGGAACAGAGATCGAAATGAAAAAGAGAGGCCAAGCAGTCGGATCAGAGAGAGGGACAGGGGAAGGGATCGTGACTGGGATTATGATGATCGAGATAGAGATTATGGCCGTGATCGAGACCGGGACCAGGACCGGGACCGGGGTAGGCATCGTCACTAA 1182 0.4856 MASHQGKVPPSNGSVYVCNLPFGTDETMLAEYFGTIGLIKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGSTIGVFIAESKNKDEQAYNSVAEPAVAGNVGGLEETTRDVNGGSGRGRGQIDSSGKAWQQEGDWLCPNTSCSNVNFAFRGACNRCGSARPVGAAGVAGGGGRGKGRASQGQESGGVGRPVTGGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEEIEETRRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARVLPGSGRAGWEVEDLGIDRDSRERSRDRVRDRNDGESRNRDRNEKERPSSRIRERDRGRDRDWDYDDRDRDYGRDRDRDQDRDRGRHRH* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0896 393 SMART zf_4 151 177 IPR001876 -
Ahy13g0896 393 SMART zf_4 217 241 IPR001876 -
Ahy13g0896 393 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15 1 387 - -
Ahy13g0896 393 ProSitePatterns Zinc finger RanBP2-type signature. 153 174 IPR001876 -
Ahy13g0896 393 MobiDBLite consensus disorder prediction 256 279 - -
Ahy13g0896 393 CDD RRM_SARFH 15 97 - -
Ahy13g0896 393 ProSitePatterns Zinc finger RanBP2-type signature. 219 238 IPR001876 -
Ahy13g0896 393 SMART rrm1_1 14 95 IPR000504 GO:0003723
Ahy13g0896 393 Coils Coil 259 279 - -
Ahy13g0896 393 Pfam Zn-finger in Ran binding protein and others 218 244 IPR001876 -
Ahy13g0896 393 Pfam Zn-finger in Ran binding protein and others 150 179 IPR001876 -
Ahy13g0896 393 MobiDBLite consensus disorder prediction 184 211 - -
Ahy13g0896 393 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Ahy13g0896 393 MobiDBLite consensus disorder prediction 122 145 - -
Ahy13g0896 393 SUPERFAMILY RNA-binding domain, RBD 10 102 IPR035979 GO:0003676
Ahy13g0896 393 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 92 IPR000504 GO:0003723
Ahy13g0896 393 Gene3D - 12 95 IPR012677 -
Ahy13g0896 393 MobiDBLite consensus disorder prediction 317 393 - -
Ahy13g0896 393 SUPERFAMILY Ran binding protein zinc finger-like 143 181 IPR036443 -
Ahy13g0896 393 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 1 387 - -
Ahy13g0896 393 MobiDBLite consensus disorder prediction 245 279 - -
Ahy13g0896 393 Gene3D - 145 181 - -
Ahy13g0896 393 Gene3D - 214 245 - -
Ahy13g0896 393 SUPERFAMILY Ran binding protein zinc finger-like 211 245 IPR036443 -
Ahy13g0896 393 ProSiteProfiles Zinc finger RanBP2 type profile. 149 180 IPR001876 -
Ahy13g0896 393 ProSiteProfiles Zinc finger RanBP2 type profile. 215 244 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0896 Ahy-Chr13 9552389 9556367 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0896 - - aip:107628735 657.136