Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0625 ATGAGCAACCACCATAACCAACAAGATCAGCGTAACGGCATTCTCGATTCCACCTTCAATCAAACCCTTAGAACTGTTCAAGGGTTACTTAAAGGTCGTAGCATGCCTGGGAAAATATTATTGAGCCCGAGATCAGACCCAGTAGATGGCTTGAACACGAAGGACTCATCGCCAAGTTACAGGAGGAGCTTCTCACACAATGATGCTGGCACTAGTGACCATACATATGGGGCAGATGAGGAAGAAGTTCAGAGTCCAACTATTATTGCCAACTTGAATCGGTTATCAATCTCGCATGTAGAGAGATCATCCAAAGAATTCTGCAAGTCTACCATTGGTGCCAGATCTACAGATTCTGCAAGAGTTATGAAGTTCACTAAGGTTCTTTCTGGGACAACAGTTATATTAGACAAGTTGCGTGAGCTAGCTTGGAGTGGTGTTCCAGATGACATGCGCCCTACTGTGTGGAGGCTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGGGTTCTACGAAGAAAGCGCCTTGAGTATCTTGAGTGTATTTCTCAGTATTATGATATTCCTGATACTGATCGTTCCGATGATGAGATCAACATGCGTCGCCAGATTGTTGTTGATTGTCCAAGAACTGTACCTGATGTTCCATTCTTCCAGCAACAGCAAGTTCAGAAATCATTGGAGCGCATTCTTTATGCATGGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACACCATTTTTAGTTGTTTTCCTTTCAGAATACTTAGAAGGGTCTATAGATAATTGGTCAATGTCTGATTTATCCTCAGACCAGATCAACAATGTAGAGGCTGATTGCTATTGGTGCTTGTCGAAGTTGCTTGATGGTATGCAAGATCATTACACATTTGCTCAACCAGGGATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGATGAACCTGTTTCACGACATGTGGAGGATCAAAGTCTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGCGAGATACCCTTCCATCTCATCACACGCCTTTGGGACACGTACCTTGCTGAAGGAGATGCTTTACCAGATTTCCTTGTGTATATATTTGCCAGTTTCCTTCTAACATGGTCAGACAATCTCCGGAAGCTAGATTTCCAAGAATTGGTGATATTCCTTCAACATCTTCCAACTCAGAACTGGACTCACCAAGAGCTGGAAATGGTGCTTTCCAGGGCATTTATGTGGCACAGCATGTTCAACAACTCTCCCAGCCATTTAGCCAGCTGA 1332 0.4347 MSNHHNQQDQRNGILDSTFNQTLRTVQGLLKGRSMPGKILLSPRSDPVDGLNTKDSSPSYRRSFSHNDAGTSDHTYGADEEEVQSPTIIANLNRLSISHVERSSKEFCKSTIGARSTDSARVMKFTKVLSGTTVILDKLRELAWSGVPDDMRPTVWRLLLGYAPPNSDRREGVLRRKRLEYLECISQYYDIPDTDRSDDEINMRRQIVVDCPRTVPDVPFFQQQQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGSIDNWSMSDLSSDQINNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHVEDQSLEFLQFAFRWFNCLLIREIPFHLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDNLRKLDFQELVIFLQHLPTQNWTHQELEMVLSRAFMWHSMFNNSPSHLAS* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0625 443 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 309 431 IPR035969 -
Ahy13g0625 443 MobiDBLite consensus disorder prediction 49 72 - -
Ahy13g0625 443 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 4 440 - -
Ahy13g0625 443 MobiDBLite consensus disorder prediction 36 79 - -
Ahy13g0625 443 Pfam Rab-GTPase-TBC domain 149 390 IPR000195 -
Ahy13g0625 443 ProSiteProfiles TBC/rab GAP domain profile. 146 373 IPR000195 -
Ahy13g0625 443 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 4 440 - -
Ahy13g0625 443 Gene3D - 123 174 - -
Ahy13g0625 443 Gene3D - 308 443 - -
Ahy13g0625 443 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 182 307 - -
Ahy13g0625 443 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 124 333 IPR035969 -
Ahy13g0625 443 SMART tbc_4 143 399 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0625 Ahy-Chr13 6554374 6558495 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0625 K20360 - gmx:100819281 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0285 18 2346593 2350720 Ahy13g0625 13 6554374 6558495 PCT
Ahy8g1073 8 25729728 25733765 Ahy13g0625 13 6554374 6558495 PCT
Ahy13g0625 13 6554374 6558495 Ahy18g0285 18 2346593 2350720 PCT
Ahy13g0625 13 6554374 6558495 Ahy8g1073 8 25729728 25733765 PCT