Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0612 ATGAGTGAGATGGGTAATCTGAGCAAGCAGCTTCTTAAGCTCTTTCTTTTCCTCTTTGCAACTCTTCAGTTCCCTTCTTCTTCCTTCGCTGAGGTCTTCTTCGAAGAGAGGTTCGAAGATGGATGGAAGAGTCGTTGGGTTTTATCAGATTGGAAAAGGAGTGAAGGAAAAGCTGGTACCTTTAAGCACACTGCAGGAAAATGGCCTGGAGATCCTGATGACAAAGGTCTCCAAACATATAATGATGCCAAGCATTATGCCATATCTGCGAAGATACCAGAGTTGAGCAACAAGAACAAGACACTGGTGGTCCAGTATTCTATTAGGTTTGAGCAGGACATTGAATGCGGCGGTGGTTACATCAAGCTTCTTTCTGGTTATGTCAATCAGAAGAAGTTTGGTGGGGATACTCCGTACAGTCTGATGTTTGGACCAGATATATGCGGCACACAGACCAAAAAGCTGCATCTTATACTATCATACCAGGGGCAGAACTACCCCATTAGAAAGGATCTACAATGTGAAACAGACAAAATGACTCATTTCTATACATTTATTCTAAGGCCTGATGCCTCTTATAGTGTCCTTGTTGATAATCGTGAAAGAGACTCTGGAAGCATGTATACAGATTGGGACATCCTTCCTCCAAGGAAGATCAAGGATGTCAATGCCAAAAAGCCAGCTGACTGGGATGATAGAGAGTACATTGAAGATCCTAATGAAGTCAAACCAGAGGGGTATGATTCAATCCCAGCTGAAATTCCTGATCCTAAAGCCAAGAAGCCTGCTGACTGGGATGAGGATGAAGATGGACTATGGAAGCCCTCCAAAGTGCCCAATCCAGCATACAAAGGGCCATGGAAACGCAAGAAAATCAAGAACCCCAATTACAAGGGAAAGTGGAAGATCCCATGGATTGACAACCCAGAATTCGAGGACGATCCTGATCTCTATGTGTTGAAACCAATAAAATATGTGGGCATCGAAGTGTGGCAGGTGAAGGCTGGTTCAATTTTCGACAATATTTTACTTTGTGATGACCCACAGTATGCAAAGCAAATTGTGGATGAATATATGGCTAATAATAAAGAGGTGAGCACTTGCTTTCAGTGTTCGTATCTTTTATTTGGTTTATTGGAACCATGA 1146 0.4267 MSEMGNLSKQLLKLFLFLFATLQFPSSSFAEVFFEERFEDGWKSRWVLSDWKRSEGKAGTFKHTAGKWPGDPDDKGLQTYNDAKHYAISAKIPELSNKNKTLVVQYSIRFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSLMFGPDICGTQTKKLHLILSYQGQNYPIRKDLQCETDKMTHFYTFILRPDASYSVLVDNRERDSGSMYTDWDILPPRKIKDVNAKKPADWDDREYIEDPNEVKPEGYDSIPAEIPDPKAKKPADWDEDEDGLWKPSKVPNPAYKGPWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSIFDNILLCDDPQYAKQIVDEYMANNKEVSTCFQCSYLLFGLLEP* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0612 381 PIRSF Calreticulin 10 370 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Ahy13g0612 381 Gene3D - 31 370 - -
Ahy13g0612 381 MobiDBLite consensus disorder prediction 230 276 - -
Ahy13g0612 381 MobiDBLite consensus disorder prediction 230 244 - -
Ahy13g0612 381 Gene3D Calreticulin/calnexin, P domain 216 317 IPR009033 GO:0005509|GO:0005515
Ahy13g0612 381 ProSitePatterns Calreticulin family signature 1. 109 124 IPR018124 GO:0005509
Ahy13g0612 381 PRINTS Calreticulin signature 325 345 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Ahy13g0612 381 PRINTS Calreticulin signature 137 153 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Ahy13g0612 381 PRINTS Calreticulin signature 292 311 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Ahy13g0612 381 PRINTS Calreticulin signature 226 239 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Ahy13g0612 381 PRINTS Calreticulin signature 111 129 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Ahy13g0612 381 PRINTS Calreticulin signature 254 276 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Ahy13g0612 381 Pfam Calreticulin family 35 270 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Ahy13g0612 381 Pfam Calreticulin family 271 344 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Ahy13g0612 381 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 229 IPR013320 -
Ahy13g0612 381 MobiDBLite consensus disorder prediction 254 274 - -
Ahy13g0612 381 PANTHER CALRETICULIN AND CALNEXIN 9 365 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Ahy13g0612 381 SUPERFAMILY P-domain of calnexin/calreticulin 212 327 IPR009033 GO:0005509|GO:0005515
Ahy13g0612 381 PANTHER CALRETICULIN-3 9 365 - -
Ahy13g0612 381 ProSitePatterns Calreticulin family signature 2. 141 149 IPR018124 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0612 Ahy-Chr13 6368865 6372663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0612 9 352 Miscellaneous Gene Families AT5G61790 34.586 7.21e-67 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0612 K08057 - gmx:100802428 697.582