Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0402 ATGATGATGGATAGAAACAGAGCGAAAGGCATTACTTTCACGAAGGAACCGTACATCGAAGATGCAGGGCCACGCATTGTGAAGAGCATGAAGTTCAGTTCCTTATCTGACTCTGAGATTGGAAAACTCGCTGAAGTTCAAGTCTTCAAAGGCTCTTACTATGATCACTTCAAAAAACCCATCCCTGGTGGCTTGTTGGATCCTCGCATGGGTCCTGCTAATAAGGAGCTTATTTGCGCCACATGTGGTGGCGACTTTGCTCATTGTCCGGGCCACTTCGGATACTTAAATCTTGCCCTTCCCATCTTCAACATTGGATTCTTGGGTACCATTGTGGAAATATTGAAGTCCATTTGCAAGTGCTGTGCTCGAATTCTTCTCAATGAAGATATACGTAAAGATCGTTTGAAAAAAATGAGAAGACCCAGAATTGATGCACTGGCGAAGGCTGAATTAGCGAAAAAGGTTGTAGAGGCATGCAGCAAAGTATCAATGTGCTCGAGATGTGGATATAAGAATGGTTCGGTAAAGAAGCTTGTGGGTTCGCTAAAAATCACTCATGATCGCTCAAAATGTAATGATAGTAGCATTGAAGAATTTCAAACAGCACTTTCACATGCAAGAGAATCTAGATTGACCAGCGCTGTGGATACTCATATTCTAAACCCATTCCAAGCTTTATCCCTGTTTAAAAGGATGCTGGATGAGGACTGTGAATTACTTTATCTTGCTGAAAGACCAGAGAAACTCATCGTTACAAACATTGCAGTGCCCCCATTGGCTATGCGACCTTCAGTTATAATGGATGGATCACAGAGCAATGAAAATGATGTAACAGAGAGGCTAAAGCAAATAGTCCAAGCTAATGCTCATGTGCGCCAAGAATTAGAAGAAATTGCTTCATTAAGATCTCTGGATGGTTGGGAAACGCTTCAATTTGAGGCTGCTCAATTCATAAATAGTGAGGTTCGTGGTATACCATACCACCAGCAACGGGAAAAGACAATGGCGGGTTTAGTTCAACGCCTTAAAGGGAAGCAGGGACGTTTTCGTGGCAACTTATCTGGGAAACGTGTTGAATTTACTGGCAGGACAGTTATTTCACCGGATCCTAATTTAAAGATTACTGAGGTTGCAGTACCCATGCTTATGGCTCGTATATTGAGTTATCCTGAGCGTGTTTCACATCACAACATTGAAAAGCTGAGACAGTGTATAAGAAATGGTCCTGATAAGTATCCTGGTGCAAGACAATATAGAGATGCCTCGGGTTCCACATGGACCTTAAGAGTTCCTCACAGGAAGCGCTTTGCAGACCAGCTGAAATTTGGTGATATAGTTGATCGTCATTTGGAAGATGGCGACATTATTCTTTTTAATAGGCAGCCAAGCTTGCATCGGATGTCTATAATGTGTCATAGGGCGAGGATTATGCCTTGGAGAACTTTGAGATTCAATGAATCTGTTTGCAACCCATATAATGCTGATTTTGATGGTGATGAGATGAACTTACATGTGCCACAGACTGAGGAAGCACGGACAGAGGCTATTTTGTTGATGGGGGTGCAAAATAATCTGTGCACACCAAAAAATGGCGAAATTTTGGTTGCCTCTACTCAAGACTTCTTAACCTCTTCCTATCTCATAACTAGAAAAGATACATTTTATGATCGTTCAACCTTTTCACTTATTTGCTCATACATGGGGGATGGCATGGATCTTGTTGATCTGCCAACTCCTGCAATTATTAAGCCAGTTGAGCTTTGGAGTGGTAAACAGTTATTTAGCGTTCTATCGCCAAATGCAAATGTGAGAGTCTATGTGAATCTTACTGTTAAGGAGAAAATATACAGTACAAAGCTTGATGACAGGAAACGAGAAATGAAAACGATGTGCCCAAGTGATGGGTTTGTCTATTTTCGCAATAGTGAGTTGATATCAGGACAACTTGGAAAGGTGACTTTAGGGAATGGAAATAAGGATGGTCTTTTCTCTGTGCTACTAAGAGACTATAAACCACATGCTGCTGCTGCTTGCATGAATCGTGTAGCTAAATTGAGTGCTCGATGGATCGGAAATCATGGGTTCTCAATTGGCATTGATGATGTCCAACCAAAAGAGGTTTTGATAGAACAGAAAGATAAAACAATATCTGATAATTATAAAAAATGTCATGATTTTATAGCAGCTTTCAATAAAGGAAAGCTAGAACTCAAAGCCGGTTGTGATGCTGCTCAGACATTAGAAACTCTGATAACTGGTGTCTTGAATGGTATACGAGATACAGCAGGAAAGGTTTGCATGCAAACCCTACACTGGAGAAATAGCCCACTGATCATGTCGCAGTGTGGCTCCAAAGGATCTCCAATTAATATCAGTCAGATGGTTGCTTGTGTGGGTCAACAATCAGTTGGAGGTCGTCGTGCTCCTAATGGTTTCGTGGACCGTAGTCTTCCTCATTTCCCTAGAAAAGCAAAAACCCCAGCTGCTAAAGGTTTTGTTGCCGAATCTTTTTACAGTGGATTGTCTGCTACTGAGTTTTTCTTCCACACAATGGGAGGGCGTGAAGGGCTTGTTGATACAGCGGTTAAAACTGCAGACACTGGATACATGTCTCGTAGATTAATGAAATCTGAGGATTTGTTCTTACAGTATGATTACACTGTAAGAAATGCTGCTGGTGGTATTGTTCAATTTTGTTATGGAGATGATGGCATGGATCCAGCTGGCATGGAAGGAAAAGATGGAAAACCACTAAATTTTGACCGGCTGTTTTTGAGAAGCCAGGCCATATGTCCAAGTGATGAAGACGATGACATCTTGTCTTCCTCAGATGTGCATGAAGTAGTTCAAAGGAAGCTTTCAGAAGTTGGTATGTGCAAGTTAGTCGAGCAAGAGGCTTCAGCGGATGATTCCTCTGCCGGCTTCGTAAATTCTCTTCAATCCTTTATCAAAGGGAAAATAGAATCAACAGAACCTTCCACCGAAGAGGATTCTGAAAAGCTGAAAAAGTTTATTCAGAGGATTTCTGGGATTACTCGCAGACAACTAGAGGTATTTATTCGATATTGTTTATCTCGTTACCATTCAAAAAAAATTGAGGCTGGAACTCCCATCGGAGCAATTGGAGCTCATAGTATTGGAGAGCCTGGAACCCAGATGACTTTGAACTTTCACTTTGCTGGGGTTGCAAGCATGAATGTGACCCTTGGAGTTCCTCGCATCAAAGAAATTATAAATGGATCCAAAAAGATCAGCACACCAATTATCACTGCAATACTTGAGACAGATAATAATCCAAATACCGCAAGGATAGTAAAAGGTCGCATAGAAAAAACCAACTTAGGCCAGGTCGCAAAGAGTATAAAAGTTGTTATAACTTCAAGATCAGCATCAATTGTCATCTCGCTTGACATGGAAAGAATTCGAGATGCACATCTGCATGTAGATGCCAATATTGTAAGAGAGTCGATTTTGCATACTCCAAAACTAAAATTGAAGCAAGACAATGTTAAGATCTTAGATATCAAAAAGCTCAGGATTGTTCCAGATGGTGATAGAAGTAAAATCCAATTTCAACTTAACCATCTTAAAAATTTGCTTCCTTCAGTTGTTGTGAAGGGAATTAAAACTGCTGAACGTGTTGTTATCAGTAAAGAAGAAGATAAAGAGAAAAAAACTGAAAAGTTCAAATTACTGGTGGAAGGCACGGGTCTTCTAGATGTTATGGGAACTGAAGGGGTTGATGGACGTAATACTCTTAGTAATCATATAGATGAAGTGAGTGAGTCTGGAATTGAAGCTGCTAGAAGGACTATCATTGAGGAGATAAAAGTAGTTATGGGAAGTCACGGTATGAGTATAGACATACGCCATATGATGCTTCTAGCAGATGTGATGACTGTTATGGGCAGAGTCCTTGGAATAACCAGATTCGGAATTCAAAAGATGGGCAAAAGTGTCTTGATGCTTGCGTCTTTTGAGAGGACATCGGATCATCTTTTCAATGCAGCGGTACATGGGACAGAGGACCTGATTGAAGGAGTAAGTGAACGCGTAATCATGGGTATACCGATTCAGATAGGCACCGGAATGATCAAGGTCAAACAAAGGTTGAGTCCTCCAGAGTTGCTTCAAGGAACTCCTCCTATTCTATCTTATGTTTGA 4167 0.4096 MMMDRNRAKGITFTKEPYIEDAGPRIVKSMKFSSLSDSEIGKLAEVQVFKGSYYDHFKKPIPGGLLDPRMGPANKELICATCGGDFAHCPGHFGYLNLALPIFNIGFLGTIVEILKSICKCCARILLNEDIRKDRLKKMRRPRIDALAKAELAKKVVEACSKVSMCSRCGYKNGSVKKLVGSLKITHDRSKCNDSSIEEFQTALSHARESRLTSAVDTHILNPFQALSLFKRMLDEDCELLYLAERPEKLIVTNIAVPPLAMRPSVIMDGSQSNENDVTERLKQIVQANAHVRQELEEIASLRSLDGWETLQFEAAQFINSEVRGIPYHQQREKTMAGLVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKITEVAVPMLMARILSYPERVSHHNIEKLRQCIRNGPDKYPGARQYRDASGSTWTLRVPHRKRFADQLKFGDIVDRHLEDGDIILFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSYLITRKDTFYDRSTFSLICSYMGDGMDLVDLPTPAIIKPVELWSGKQLFSVLSPNANVRVYVNLTVKEKIYSTKLDDRKREMKTMCPSDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKPHAAAACMNRVAKLSARWIGNHGFSIGIDDVQPKEVLIEQKDKTISDNYKKCHDFIAAFNKGKLELKAGCDAAQTLETLITGVLNGIRDTAGKVCMQTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFVDRSLPHFPRKAKTPAAKGFVAESFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKSEDLFLQYDYTVRNAAGGIVQFCYGDDGMDPAGMEGKDGKPLNFDRLFLRSQAICPSDEDDDILSSSDVHEVVQRKLSEVGMCKLVEQEASADDSSAGFVNSLQSFIKGKIESTEPSTEEDSEKLKKFIQRISGITRRQLEVFIRYCLSRYHSKKIEAGTPIGAIGAHSIGEPGTQMTLNFHFAGVASMNVTLGVPRIKEIINGSKKISTPIITAILETDNNPNTARIVKGRIEKTNLGQVAKSIKVVITSRSASIVISLDMERIRDAHLHVDANIVRESILHTPKLKLKQDNVKILDIKKLRIVPDGDRSKIQFQLNHLKNLLPSVVVKGIKTAERVVISKEEDKEKKTEKFKLLVEGTGLLDVMGTEGVDGRNTLSNHIDEVSESGIEAARRTIIEEIKVVMGSHGMSIDIRHMMLLADVMTVMGRVLGITRFGIQKMGKSVLMLASFERTSDHLFNAAVHGTEDLIEGVSERVIMGIPIQIGTGMIKVKQRLSPPELLQGTPPILSYV* 1389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0402 1388 Pfam RNA polymerase Rpb1, domain 1 26 354 IPR007080 GO:0003677|GO:0003899|GO:0006351
Ahy13g0402 1388 SMART rpolaneu7 248 550 IPR006592 GO:0003677|GO:0003899|GO:0006351
Ahy13g0402 1388 Gene3D RNA polymerase ii 389 449 - -
Ahy13g0402 1388 Gene3D - 879 930 - -
Ahy13g0402 1388 Gene3D RNA polymerase Rpb1, domain 3 530 702 IPR042102 -
Ahy13g0402 1388 Gene3D - 1318 1374 - -
Ahy13g0402 1388 Pfam RNA polymerase Rpb1, domain 2 356 522 IPR000722 GO:0003677|GO:0003899|GO:0006351
Ahy13g0402 1388 Gene3D RNA polymerase II, clamp domain 17 141 IPR044893 -
Ahy13g0402 1388 PANTHER DNA-DIRECTED RNA POLYMERASE 11 1373 IPR045867 GO:0003899|GO:0006351
Ahy13g0402 1388 Pfam RNA polymerase Rpb1, domain 3 525 703 IPR007066 GO:0003677|GO:0003899|GO:0006351
Ahy13g0402 1388 Gene3D - 821 878 - -
Ahy13g0402 1388 Pfam RNA polymerase Rpb1, domain 5 841 1320 IPR007081 GO:0003677|GO:0003899|GO:0006351
Ahy13g0402 1388 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 11 1373 - -
Ahy13g0402 1388 CDD RNAP_III_RPC1_N 35 890 IPR035697 -
Ahy13g0402 1388 CDD RNAP_III_Rpc1_C 1027 1366 IPR035698 -
Ahy13g0402 1388 Pfam RNA polymerase Rpb1, domain 4 732 834 IPR007083 GO:0003677|GO:0003899|GO:0006351
Ahy13g0402 1388 Gene3D - 703 820 IPR038120 -
Ahy13g0402 1388 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 20 1370 - -
Ahy13g0402 1388 Gene3D - 347 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0402 Ahy-Chr13 4143380 4156018 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0402 K03018 - gmx:100811292 2103.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0402 13 4143380 4156018 Ahy13g0402 13 4143380 4156018 ECH