Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0262 ATGGCTCCGATTCCGTCAGAGAACGGTGTAGATGGAGACGACGAGAGAGAAGAAGAGGAAGAGGAAGAAGTTGAAGAAGACGAAGAAGAAGAGGAGGAGGAAGAAGAAGACGAAGAGGAGCCACGGCTTAAGTACCAGAGAATGGGAGGGAGCATACCTACGATGCTTGCCACCGATGCTGCGTCATGCATCGCCGTCGCCGAGCGGATGATCGCGCTCGGCACTCAGGGCGGCACTGTTCACATCCTCGATTTTCTCGGCAATCAGGTGAAAGAATTCGCCGCCCATGCTTCCGTTGTCAACGACCTTAGCTTTGACATAGAAGGGGAGTTTATTGGAAGCTGTTCCGATGATGGATCAGTTGTTATAAACAGTCTCTTCACTGATGAGAAAATGAAATTTGAGTACCAACGACCAATGAAAGCGATTGCATTGGACCCAGAATATGCAAGGAATGCGTCTAGGAGATTTGTTGCTGGTGGTTTAGCAGGTCATTTGTATTTAAATTCGAAGAAATGGTTGGGCTATCGTGACCAGGTTTTGCACACCGGGGAAGGTCCAATACATGCTGTGACATGGAGAACAAGTCTTGTTGCTTGGGCAAATGATGCAGGGGTGAAGGTTTATGATACTGCCAATGACCAGCGTATAACATTTATCGAAAGACCGCGAGGAAGCCCACGCCCTGAGCTTCTGCGTCCTCACTTGGTTTGGCAGGATGACACCCTCTTGGTTATTGGCTGGGGAACATCTGTGAAAATTGTTTCTCTAAGGACAAATAACCATAAAGCAGCCAATGGGACATACAGGCAAGTTCCTTTGTCTGGTATGGTGCAGGTTGATATTATGGCATCCTTTCAGACTGGCTATTTCATATCAGGCATTGCCCCCTTTGGTGATGTATTGGTAGTTCTAGCTTATATTCCTGGAGAGGAAGATGAAAATAAGGATTTTAGTAGTACCGCTCCTTCGCGGCAGGGCAATGCACAAAGGCCAGAAGTTAGAATAGTATCATGGAACAATGATGAACTTTCAACTGATGCTCTACCGGTACATGGGTTTGAGCATTACAAGGCGAAAGACTATTCTCTTGCTCATGCTCCTTTCTCAGGTAGCAGCTATGCTGGTGGTCAGTGGGCTGCAGCCAATAACTCACTTCCCCTTCAACGTAAGCTGTTATTGCCATTAGCACTGGATACGGAAGATCATATTGCATGGCTTCTTCAGCATGGGTGGCATGAAAAAGCTTTGGCTGCAGTTGAATCTGGTCAGGGACGCAGTGAACTTCTTGATGAGGTAGGATCGAGGTACCTAGATCATTTGATTGTGGAACGAAAATATGGTGAAGCAGCTTCTCTATGTCCCAAGTTGCTGCGAGGATCAGCTTCAGCATGGGAGAGATGGGTATTTCACTTTGCCCACCTTCGTCAACTCCCTGTTTTGGTTCCTTACATGCCAACAGAAAACCCTAGACTACGTGATACTGCTTATGAGGTTGCCCTTGTGGCATTGGCTACAAATCCATCTTATCATAAGGATCTCTTGTCCACTGTGAAATCATGGCCATCTGTAATTTATTCTGCGTTACCTGTAATTTCAGCCATCGAACCTCAGCTCAATACTTCATCCATGACCGATTCGCTCAAGGAGGCATTGGCAGAGTTGTATGTTATTGCTGGGCAATACGATAAAGCATTTTCATTTTATGCTGATCTTATGAAACCAGAACTCTTTGATTTCATTGATAAATATAACCTACAAGATTCAATCCATGAAAAGGTTGTCCAATTGATGATGTTGGATTGCAAGCGTGCAGTTCCTTTATTGATCCAGCATAGGGACTTAATAAGTCCACAAGAAGTTGTGAAGCAACTTCTAAATGCTGATGTTAAGTGTGACTGCAGATACTTTTTACATTTGTATCTCCATTCACTATTTGAAGTAAATCCGCATGCTGGGAAAGACTTTCATGATATACAGGTAGAACTCTATGCAGATTATGATCCAAAGATGCTGCTACCTTTTCTACATAGCAGTCAGCACTATACTCTTGAGAAGGCCTATGAAATTTGCACTAAAAAAGAGCTACTGAAGGAGCAAGTTTTCATCTTAGGAAGGATGGGAAACTCAAAGCAAGCCCTAGCAGTTATTATAAATAAACTGGGGGACATTAAGGAGGCTGTAGAGTTTGTCACTATGCAGAATGATGATGAACTCTGGGAAGAATTAATCAAGCAATGCATTGACAAGCCTGAAATGGTGGGCATGCTATTGGAGCACACAGTTGGAAATCTTGATCCCCTCTACATTGTAAATAAGGTTCCCAATGGGTTGGAAATACCTCGGCTTAGGGATCGGCTGGTTAAAATTATCACTGATTACAGGACTGAAACTTCGCTTAGACATGGGTGCAATGATATCCTTAAGGCGGACTGTGTCAACCTTTTAATCAAGTACTACAAGGAGGCACGGCATGGAATTTCTTTAGGTAGTGAAGAAGACGAGCCACGAATAAAAAATAGTGATACTCATGATTCTTCAAAATCCCTTGGTCTGAGAAACATGGAAATGAAGTCAAAGACCAGGGGAGGTGGAAGATGTTGTATATGTTTTGATCCTTTCTCTATACAGAATGTTTCAGTCATTGCTTTCTTTTGCTGTCATGCTTACCACACAACTTGTCTCACGGATTCGTCGTACACTAGTAATAATAGCAAGAAAGAGATTAAGAGCAATTCCCGAGAAACATATGATGATTACAATGATTATATGGATGAGGAGGAGGAGGAAGAGGATGAAGAAGCCGAATTGGGTGCCCCTCGAATGCGTTGTATATTGTGTACTACTGCTGCTAGTTGA 2859 0.4362 MAPIPSENGVDGDDEREEEEEEEVEEDEEEEEEEEEDEEEPRLKYQRMGGSIPTMLATDAASCIAVAERMIALGTQGGTVHILDFLGNQVKEFAAHASVVNDLSFDIEGEFIGSCSDDGSVVINSLFTDEKMKFEYQRPMKAIALDPEYARNASRRFVAGGLAGHLYLNSKKWLGYRDQVLHTGEGPIHAVTWRTSLVAWANDAGVKVYDTANDQRITFIERPRGSPRPELLRPHLVWQDDTLLVIGWGTSVKIVSLRTNNHKAANGTYRQVPLSGMVQVDIMASFQTGYFISGIAPFGDVLVVLAYIPGEEDENKDFSSTAPSRQGNAQRPEVRIVSWNNDELSTDALPVHGFEHYKAKDYSLAHAPFSGSSYAGGQWAAANNSLPLQRKLLLPLALDTEDHIAWLLQHGWHEKALAAVESGQGRSELLDEVGSRYLDHLIVERKYGEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSYHKDLLSTVKSWPSVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVIAGQYDKAFSFYADLMKPELFDFIDKYNLQDSIHEKVVQLMMLDCKRAVPLLIQHRDLISPQEVVKQLLNADVKCDCRYFLHLYLHSLFEVNPHAGKDFHDIQVELYADYDPKMLLPFLHSSQHYTLEKAYEICTKKELLKEQVFILGRMGNSKQALAVIINKLGDIKEAVEFVTMQNDDELWEELIKQCIDKPEMVGMLLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLIKYYKEARHGISLGSEEDEPRIKNSDTHDSSKSLGLRNMEMKSKTRGGGRCCICFDPFSIQNVSVIAFFCCHAYHTTCLTDSSYTSNNSKKEIKSNSRETYDDYNDYMDEEEEEEDEEAELGAPRMRCILCTTAAS* 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0262 952 SUPERFAMILY RING/U-box 866 904 - -
Ahy13g0262 952 Gene3D Tetratricopeptide repeat domain 641 816 IPR011990 GO:0005515
Ahy13g0262 952 PANTHER VACUOLAR PROTEIN SORTING VPS41 1 951 IPR045111 GO:0006623
Ahy13g0262 952 Coils Coil 910 930 - -
Ahy13g0262 952 PIRSF Vps41 1 908 IPR016902 GO:0034058|GO:0046907
Ahy13g0262 952 PIRSF Vps41 897 943 IPR016902 GO:0034058|GO:0046907
Ahy13g0262 952 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 1 951 - -
Ahy13g0262 952 Pfam Region in Clathrin and VPS 610 752 IPR000547 GO:0006886|GO:0016192
Ahy13g0262 952 MobiDBLite consensus disorder prediction 11 39 - -
Ahy13g0262 952 MobiDBLite consensus disorder prediction 1 45 - -
Ahy13g0262 952 Gene3D - 8 280 IPR015943 GO:0005515
Ahy13g0262 952 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 609 756 IPR000547 GO:0006886|GO:0016192
Ahy13g0262 952 SMART CLH_2 609 756 IPR000547 GO:0006886|GO:0016192
Ahy13g0262 952 MobiDBLite consensus disorder prediction 899 918 - -
Ahy13g0262 952 SUPERFAMILY WD40 repeat-like 58 262 IPR036322 GO:0005515
Ahy13g0262 952 Coils Coil 10 40 - -
Ahy13g0262 952 SMART ring_2 867 947 IPR001841 -
Ahy13g0262 952 SMART WD40_4 86 125 IPR001680 GO:0005515
Ahy13g0262 952 SMART WD40_4 174 210 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0262 Ahy-Chr13 2685400 2692947 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0262 K20184 - gmx:100804340 1597.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0262 13 2685400 2692947 Ahy13g0262 13 2685400 2692947 ECH