Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0201 ATGGCGATCCTCTATGCCTTGGTGGCCAGGGGCACAGTGGTGCTGGCGGAGTTCAGCGCTGTCACCGGGAATACTGGCGCTGTGGCACGCCGCATCCTGGAGAAGCTCCCGGCGGAGGCCGAGTCCAGGCTCTGCTTTTCTCAGGACCGATACATCTTCCACATACTCCGTTCCGATGGCCTCTCATACCTCTGTATGGCCAACGACACCTTCGGAAGGAGAATCCCTTTTTCATACTTAGAAGATATCCAAATGAGGTTTATGAAGAACTACGGTAGAGTGGCCCAATTTGCACCAGCCTATGCTATGAATGATGAGTTTTCAAGAGTTCTTCACCAGCAAATGGAATTCTTTTCTAGCAATCCTAGTGCTGATACCCTCAATCGTGTCAGGGGTGAAGTTGGTGAGATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGCGATCGAATTGAGCTTCTTGTTGATAAGACCGCGACAATGCAAGACAGTGCATTTCACTTTAGGAAACAATCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAATTTCAAACTCCTGGCGCTATTGACTTGCTTGATTGTTCTCTTACTTTACCTTATTATCGCTGCTTGTTGTGGAGGCATCACTCTACCATCATGCAGATCCTAG 663 0.4781 MAILYALVARGTVVLAEFSAVTGNTGAVARRILEKLPAEAESRLCFSQDRYIFHILRSDGLSYLCMANDTFGRRIPFSYLEDIQMRFMKNYGRVAQFAPAYAMNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVGEIRTIMVDNIEKILERGDRIELLVDKTATMQDSAFHFRKQSKRLRRALWMKNFKLLALLTCLIVLLLYLIIAACCGGITLPSCRS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0201 220 SUPERFAMILY SNARE fusion complex 121 188 - -
Ahy13g0201 220 ProSiteProfiles Longin domain profile. 7 111 IPR010908 -
Ahy13g0201 220 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 126 186 IPR042855 -
Ahy13g0201 220 PANTHER LONGIN-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 219 - -
Ahy13g0201 220 CDD R-SNARE 125 184 - -
Ahy13g0201 220 PANTHER SNARE PROTEINS 1 219 - -
Ahy13g0201 220 SUPERFAMILY SNARE-like 3 118 IPR011012 -
Ahy13g0201 220 SMART Longin_2 28 110 IPR010908 -
Ahy13g0201 220 ProSitePatterns Synaptobrevin signature. 144 163 IPR001388 GO:0016021|GO:0016192
Ahy13g0201 220 CDD Longin 4 118 IPR010908 -
Ahy13g0201 220 Coils Coil 218 220 - -
Ahy13g0201 220 Pfam Synaptobrevin 124 211 IPR042855 -
Ahy13g0201 220 PRINTS Synaptobrevin signature 131 150 IPR001388 GO:0016021|GO:0016192
Ahy13g0201 220 PRINTS Synaptobrevin signature 187 206 IPR001388 GO:0016021|GO:0016192
Ahy13g0201 220 PRINTS Synaptobrevin signature 151 170 IPR001388 GO:0016021|GO:0016192
Ahy13g0201 220 Gene3D Longin domain 1 124 - -
Ahy13g0201 220 Pfam Regulated-SNARE-like domain 29 108 IPR010908 -
Ahy13g0201 220 Gene3D - 125 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0201 Ahy-Chr13 2136858 2141733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0201 1 220 Miscellaneous Gene Families AT5G22360 86.425 3.28e-145 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0201 K08515 - tcc:18590280 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0201 13 2136858 2141733 Ahy13g0201 13 2136858 2141733 ECH