Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g3026 ATGATGAGTTTATCTTCAGGTCAAATCAGTAGTAGCTATGATCTCTCATTCAAGATCTTGTTGATTGGTGATTCAGCTGTTGGAAAAAGTAGCTTACTTCTAAGCTTCATCTCTAACTCTACTGAAGAACTTGCCCCCACAATTGGTGTTGATTTTAAGATCAAACAGCTCATAGTTGGTGGGAAGAGATTGAAACTAACAATTTGGGATACCGCTGGACAGGAAAGGTTTAGAACACTAACAAGTTCTTACTATAGAGGAGCTCAAGGGATCATTCTTGTTTATGATGTCACCAGGAGAGAAAGCTTCACAAATTTATCAGAAGTATGGTCCAAGGAGGTAGAACTCTATTCTACTAATCAGGATTGTGTGAAGTTACTAGTTGGAAATAAAGTTGACAGAGTTTCTGAAAGGGCTGTGAGCAGAGACGAGGGTTCAGCTCTTGCTAAAGAGTTGGGATGTTTGTTTTTTGAATGTAGTGCCAAAACTAGAGAAAATGTGGAAAGCTGTTTTGAAGAGCTTGCACTAAAGATAATGGATGCTCCTAGTCTTCTGGAAGAAGGATCAAGCACAGTAAAAAGGAATATTCTCAAGCAAAAACAGGAACCTCAAGCATCCCAACAAAGTGGTGGTTGTTGCTCTTGA 645 0.3922 MMSLSSGQISSSYDLSFKILLIGDSAVGKSSLLLSFISNSTEELAPTIGVDFKIKQLIVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRESFTNLSEVWSKEVELYSTNQDCVKLLVGNKVDRVSERAVSRDEGSALAKELGCLFFECSAKTRENVESCFEELALKIMDAPSLLEEGSSTVKRNILKQKQEPQASQQSGGCCS* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g3026 214 TIGRFAM small_GTP: small GTP-binding protein domain 17 173 IPR005225 GO:0005525
Ahy12g3026 214 PRINTS Transforming protein P21 ras signature 57 79 - -
Ahy12g3026 214 PRINTS Transforming protein P21 ras signature 39 55 - -
Ahy12g3026 214 PRINTS Transforming protein P21 ras signature 17 38 - -
Ahy12g3026 214 PRINTS Transforming protein P21 ras signature 156 178 - -
Ahy12g3026 214 PRINTS Transforming protein P21 ras signature 121 134 - -
Ahy12g3026 214 SMART ras_sub_4 14 181 - -
Ahy12g3026 214 SMART rho_sub_3 19 181 IPR001806 GO:0003924|GO:0005525
Ahy12g3026 214 ProSiteProfiles small GTPase Rab1 family profile. 12 213 - -
Ahy12g3026 214 PANTHER SMALL MONOMERIC GTPASE-RELATED 3 214 - -
Ahy12g3026 214 SMART ran_sub_2 22 214 - -
Ahy12g3026 214 Pfam Ras family 18 179 IPR001806 GO:0003924|GO:0005525
Ahy12g3026 214 Gene3D - 9 213 IPR027417 -
Ahy12g3026 214 ProSiteProfiles small GTPase Rho family profile. 10 181 - -
Ahy12g3026 214 SMART arf_sub_2 2 182 - -
Ahy12g3026 214 PANTHER DRAB5-RELATED 3 214 - -
Ahy12g3026 214 CDD Rab18 17 178 - -
Ahy12g3026 214 SMART rab_sub_5 17 181 - -
Ahy12g3026 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 202 IPR027417 -
Ahy12g3026 214 ProSiteProfiles small GTPase Arf family profile. 10 179 - -
Ahy12g3026 214 ProSiteProfiles small GTPase Ras family profile. 10 214 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g3026 Ahy-Chr12 119819608 119821554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g3026 16 192 EF-hand Containing Proteins AT5G27540 25.843 2.26e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g3026 K07910 - gmx:100807498 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g3026 12 119819608 119821554 Ahy12g3026 12 119819608 119821554 ECH
Ahy12g3026 12 119819608 119821554 Ahy2g2611 2 102221683 102223629 hybridization
Ahy16g1698 16 59485068 59488498 Ahy12g3026 12 119819608 119821554 PCT
Ahy12g3026 12 119819608 119821554 Ahy16g1698 16 59485068 59488498 PCT