Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2459 ATGCCGAACCACGATATAACCTCCCCTCTCATCACCTCCGATCATCTCATCCTCACCGTCGACCCACTCCCCGCCGCCGACACCACTTCCGCCGCTCCACTTTCCGGCACCGCCGGAGGGAACCCTTTTACTTTTCTGGGATGCGATGAGAGTGAAGCGTTGACTGTGCCGGTTCCGATGACCATTGACCCGTTCAAGAACAACACGCCGAATATTGAGGGAGTCTACGAGTGGTTGAAGATGCTTCTGTGCTTGCCAATTGCGATTCTCAGGCTTGTGCTTTTCGGATTGTGCCTTGCTGTTGGGTATATTGCAACGAGGTTGGCGTTGGAAGGGTGGAAGGACAAGGAGAACCCCATGCCTAAGTGGAGGTCCAGGCTCATGTGGGTTACAAGGATTTGCGCTAGATGGATCCTCTTCTCTTTTGGCTATCAGTGGATAAAGCGGAAAGGAAGACCGGCACCAAGGGAAGTTGCACCGATAATTGTATCTAATCACGTATCTTACATTGAACCTATCTTCTATTTCTATGAATTATTTCCAACCATTGTAGCATCAGAGTCTCATGATGCACTACCTTTTGTTGGCACCATTATTAGAGCAATGCAGGTCATATATGTTGATAGGTTCTCACCATCATCAAGAAAGCATGCCGTCAAGGAAATAAAGAGAAGGGCTTCTTGCAATAGATTTCCTCGAGTACTGCTATTTCCTGAGGGAACCACAACTAATGGCAGGAACCTTATCTCCTTCCAACTTGGTGCATTCATCCCCGGCTACCCAATCCAGCCTGTAATTGTTCGCTATCCTCATGTGCACTTTGATCAATCTTGGGGTAATGTTTCTTTGGGAAAGCTTATGTTCAGGATGTTCACTCAATTCCACAACTTCTTCGAGGTAGAATATCTTCCTGTCATTTCACCCCTGCATGATAAGGAAACTGCAGTCCACTTTCGTGAGAGGGCTTGCCGTGCTATTGCATCTGCGATGAATGTTGTCCAAACTGGACACACTTATGGAGACATAATGCTTTATATGAAAGCACAAGAAGCAAAACAGGAAAACCCCTCAAGTTTTATGGTTGAAATGGCGAGGGTGGAATCATTATTTCATATCAGAAGCTTGGAAGCTGTTGAATTCCTAGATAAATTCTTGGCTATGAATCCTGATCCCAGCGGTCGAGTTCAATATCATAACTTCTTGAAGGTTTTAAGACTTAAGGCATGCCCTTTATCCGAAAAGATGTTTGCATTCATTGATGTGGAGAAGTGCGGCTCAATAACGTTTAGACAGTTCTTGTACGGATCTGCTTACGTCATGAAGCATCGAGGATTCCATCAAGCTTGCGAAGAAGCATTTGCGGAATGCAGCAGTGCAGTAAAGGGCTACATTGTAGAACAAGAATTGCAAGATTTCATGCAACATGCCATCCCAAGCTGGAATGAGAATGAGGTTCATGAGCTTTTTATGTTATTTGATGATGACAATGATGGAAGAATAACCAAGGATGATTTTCATTCATGCCTCAAGAAAAACCCTCTTCTCATTGCATTTCTTACACCTCACCTTCAACACAAGGAGTGTGATGGCAATAATGGAGTTATAGAAATAGTATGA 1617 0.4453 MPNHDITSPLITSDHLILTVDPLPAADTTSAAPLSGTAGGNPFTFLGCDESEALTVPVPMTIDPFKNNTPNIEGVYEWLKMLLCLPIAILRLVLFGLCLAVGYIATRLALEGWKDKENPMPKWRSRLMWVTRICARWILFSFGYQWIKRKGRPAPREVAPIIVSNHVSYIEPIFYFYELFPTIVASESHDALPFVGTIIRAMQVIYVDRFSPSSRKHAVKEIKRRASCNRFPRVLLFPEGTTTNGRNLISFQLGAFIPGYPIQPVIVRYPHVHFDQSWGNVSLGKLMFRMFTQFHNFFEVEYLPVISPLHDKETAVHFRERACRAIASAMNVVQTGHTYGDIMLYMKAQEAKQENPSSFMVEMARVESLFHIRSLEAVEFLDKFLAMNPDPSGRVQYHNFLKVLRLKACPLSEKMFAFIDVEKCGSITFRQFLYGSAYVMKHRGFHQACEEAFAECSSAVKGYIVEQELQDFMQHAIPSWNENEVHELFMLFDDDNDGRITKDDFHSCLKKNPLLIAFLTPHLQHKECDGNNGVIEIV* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2459 538 ProSiteProfiles EF-hand calcium-binding domain profile. 480 515 IPR002048 GO:0005509
Ahy12g2459 538 SUPERFAMILY EF-hand 374 523 IPR011992 -
Ahy12g2459 538 ProSitePatterns EF-hand calcium-binding domain. 493 505 IPR018247 -
Ahy12g2459 538 CDD LPLAT_LPCAT1-like 135 343 IPR045252 GO:0008374
Ahy12g2459 538 Pfam Acyltransferase 157 264 IPR002123 GO:0016746
Ahy12g2459 538 PANTHER LYSOPHOSPHATIDYLCHOLINE ACYLTRANSFERASE 1-RELATED 38 522 - -
Ahy12g2459 538 Pfam EF-hand domain pair 462 511 IPR002048 GO:0005509
Ahy12g2459 538 SMART plsc_2 160 270 IPR002123 GO:0016746
Ahy12g2459 538 CDD EFh 449 505 IPR002048 GO:0005509
Ahy12g2459 538 PANTHER PHOSPHOLIPID ACYLTRANSFERASE 38 522 - -
Ahy12g2459 538 Gene3D - 362 515 - -
Ahy12g2459 538 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 90 336 - -
Ahy12g2459 538 SMART efh_1 484 512 IPR002048 GO:0005509
Ahy12g2459 538 SMART efh_1 448 476 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2459 Ahy-Chr12 113290359 113296478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2459 110 345 Acyl Lipid Metabolism Gene Families AT1G80950 31.203 1.29e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2459 K13510 - gmx:100818109 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2459 12 113290359 113296478 Ahy12g2459 12 113290359 113296478 ECH
Ahy12g2459 12 113290359 113296478 Ahy2g2126 2 96732925 96739235 hybridization