Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2135 ATGCAGAGATTCCATCTGGGTCTCTCTCAAAATCGAACCTTGATGATGGATTCAAGTGCCCCAAACACACCCTCCTTTCAGAACACCCCAGACTCTAACATCACCACCAACACTCTCTCTCCAAAGCCTTACAAGAAGAGCTTCGTCACCACTCTCATGGAGGCAGCAACACTCCGCACTCCTTCCTTCAAAGAAGACAACTACTTCGTCTCTCTCCTCAGACCCTCAGAGAGAAAGGCACTTCAAGAACTCAAGGAAAAGCTCAAAGCTTCTATTGACAGTAAGAATGGTGAAAATGATGGTGCTGTTATGTGGGGGATTCCACTCCTTGGTGGTGATGATCGTGCTGACGTCATACTCTTGAAGTTCCTTAGAGCAAGGGATTTTAGGGTTGCTGATGCACTCACCATGCTCCTTAAGTGCTTGCAATGGAGGAAGGACTTTGGTGCTGAAACCATTGTTGATGAGGATTTGGGATTCAAGGAGCTTGAAGGTGTGATAGCATATATGCAAGGGTATGACAAAGAAGGGCATCCAGTGTGTTACAATGCATATGGTGTTTTTAGGGATAAGGAAATGTATGAGAGGATCTTTGGTGATGAAGAGAAGCTGAAGAAGTTCCTTAGATGGAGGGTTCAGGTCCTTGAGAGGGGCATCAAGCTCCTACATTTCAAGGCTGGTGGGGTCAATTCCCTTATTCAGGTCACTGACCTTAAGGACATGCCCAAAAGGGAGCTTAGGGTTGCTTCTAACCACATCCTCTCCCTCTTCCAAGACAATTACCCAGAGATGGTGGCTCGCAAGATTTTCATCAATGTGCCATGGTACTTCAGCATGTTGTATTCAATGTTCAGCCCGTTTCTGACTCAAAGAACCAAGAGCAAGTTTGTGATCTCTAAGGAAGGAAATGCTGCTGAGACGCTCTACAAATTCATAAGGCCCGAGGATATTCCTGTTCAGTATGGAGGGCTGAATAGGCCCAGTGATTTGCAGAATGGTCCCCCAAAACCTGCTTCAGACTTCACTGTTAAAGGTGGAGAGAAAGTGAACATACAAATAGAAGGAATTGAGGCTGGTGCAACCATCACATGGGACATAGTGGTTGGTGGTTGGGACTTAGAATATAGTGCTGAGTTCGTACCAAATGCTGAAGGAAGCTACACCATAGCTGTTGAGAAGCCAAGAAAAGTTATGGCCTCAGAGGAAGCAATTCACAACTCATACACATCAAAGGAACCAGGCAAAATGGTACTCTCTGTTGATAACACTTCCTCGAGGAGGAAAAAGGTCGCGGCGTATCGCTACGTCGTCCGGAAATCCAGTAGTACCGTGTAA 1335 0.4599 MQRFHLGLSQNRTLMMDSSAPNTPSFQNTPDSNITTNTLSPKPYKKSFVTTLMEAATLRTPSFKEDNYFVSLLRPSERKALQELKEKLKASIDSKNGENDGAVMWGIPLLGGDDRADVILLKFLRARDFRVADALTMLLKCLQWRKDFGAETIVDEDLGFKELEGVIAYMQGYDKEGHPVCYNAYGVFRDKEMYERIFGDEEKLKKFLRWRVQVLERGIKLLHFKAGGVNSLIQVTDLKDMPKRELRVASNHILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNAAETLYKFIRPEDIPVQYGGLNRPSDLQNGPPKPASDFTVKGGEKVNIQIEGIEAGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKVMASEEAIHNSYTSKEPGKMVLSVDNTSSRRKKVAAYRYVVRKSSSTV* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2135 444 Pfam CRAL/TRIO domain 164 323 IPR001251 -
Ahy12g2135 444 CDD SEC14 160 324 IPR001251 -
Ahy12g2135 444 SUPERFAMILY CRAL/TRIO N-terminal domain 73 157 IPR036273 -
Ahy12g2135 444 SMART CRAL_TRIO_N_2 116 141 IPR011074 -
Ahy12g2135 444 Gene3D GOLD domain 336 437 - -
Ahy12g2135 444 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 156 329 IPR001251 -
Ahy12g2135 444 Pfam CRAL/TRIO, N-terminal domain 80 139 IPR011074 -
Ahy12g2135 444 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 341 439 IPR036598 -
Ahy12g2135 444 PANTHER PATELLIN-1 36 441 IPR044834 GO:0008289
Ahy12g2135 444 PANTHER PATELLIN-6 36 441 - -
Ahy12g2135 444 Gene3D - 155 335 IPR036865 -
Ahy12g2135 444 Coils Coil 78 98 - -
Ahy12g2135 444 SMART sec14_4 162 326 IPR001251 -
Ahy12g2135 444 Gene3D - 61 147 - -
Ahy12g2135 444 MobiDBLite consensus disorder prediction 1 39 - -
Ahy12g2135 444 ProSiteProfiles GOLD domain profile. 305 439 IPR009038 -
Ahy12g2135 444 SUPERFAMILY CRAL/TRIO domain 161 326 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2135 Ahy-Chr12 106732660 106737205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2135 120 295 Acyl Lipid Metabolism Gene Families AT5G47730 28.723 8.80e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2135 - - qsu:112015166 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2135 12 106732660 106737205 Ahy12g2135 12 106732660 106737205 ECH
Ahy12g2135 12 106732660 106737205 Ahy2g1871 2 92123924 92127914 hybridization
Ahy14g2017 14 114470447 114474293 Ahy12g2135 12 106732660 106737205 PCT
Ahy4g1762 4 103981946 103986199 Ahy12g2135 12 106732660 106737205 PCT
Ahy12g2135 12 106732660 106737205 Ahy14g2017 14 114470447 114474293 PCT
Ahy12g2135 12 106732660 106737205 Ahy4g1762 4 103981946 103986199 PCT